RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 NSUN3Q9H649 340 aaKnown RBP15.38■□□□□ 0.05
TCOF1-215ENST00000515516 UBE2ZQ9H832 354 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-215ENST00000515516 RGS18Q9NS28 235 aa15.38■□□□□ 0.05
TCOF1-215ENST00000515516 SEPT9Q9UHD8 586 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-215ENST00000515516 CUL9Q8IWT3 2517 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 DDX11L8A8MPP1 907 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 CCNT1O60563 726 aaKnown RBP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 DKC1O60832 514 aaKnown RBP eCLIP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 ZSCAN20P17040 1043 aaPredicted RBP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 KRT2P35908 639 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 NEK4P51957 841 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 CDC42EP1Q00587 391 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 TRIM29Q14134 588 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 UGCGQ16739 394 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 NAALADL2Q58DX5 795 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 SPOUT1Q5T280 376 aaKnown RBP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 PPP4R3AQ6IN85 833 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 EP400NLQ6ZTU2 488 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 PIK3AP1Q6ZUJ8 805 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 NECAB1Q8N987 351 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 ETNPPLQ8TBG4 499 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 TMEM40Q8WWA1 233 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 FAM20AQ96MK3 541 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 RC3H2Q9HBD1 1191 aaKnown RBP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 MRPL42Q9Y6G3 142 aaKnown RBP15.37■□□□□ 0.05
TCOF1-215ENST00000515516 PTPRSQ13332 1948 aa15.37■□□□□ 0.05
TCOF1-215ENST00000515516 CHD7Q9P2D1 2997 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 KAT6AQ92794 2004 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 COL4A6Q14031 1691 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.36■□□□□ 0.05
TCOF1-215ENST00000515516 NCK2O43639 380 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 BAG4O95429 457 aaKnown RBP15.36■□□□□ 0.05
TCOF1-215ENST00000515516 KCNA5P22460 613 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 PSMC5P62195 406 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 MTERF2Q49AM1 385 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 TCEAL5Q5H9L2 206 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 FAM228AQ86W67 206 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 NLRP7Q8WX94 980 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 JPH2Q9BR39 696 aaPredicted RBP15.36■□□□□ 0.05
TCOF1-215ENST00000515516 NIFKQ9BYG3 293 aaKnown RBP15.36■□□□□ 0.05
TCOF1-215ENST00000515516 ATP6V0A4Q9HBG4 840 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 AAASQ9NRG9 546 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 MICAL3Q7RTP6 2002 aa15.36■□□□□ 0.05
TCOF1-215ENST00000515516 GRM6O15303 877 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 SLC37A4O43826 429 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 MGEA5O60502 916 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 CTDNEP1O95476 244 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 EIF4BP23588 611 aaKnown RBP15.35■□□□□ 0.05
TCOF1-215ENST00000515516 ME3Q16798 604 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 PUS10Q3MIT2 529 aaKnown RBP15.35■□□□□ 0.05
TCOF1-215ENST00000515516 LEXMQ3ZCV2 418 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 CRIPAKQ8N1N5 446 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 LINC01465Q8N7H1 131 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 P2RX5Q93086 422 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 GTF3C6Q969F1 213 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 PPP2R3CQ969Q6 453 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 NECAB3Q96P71 396 aaPredicted RBP15.35■□□□□ 0.05
TCOF1-215ENST00000515516 ADAMTS10Q9H324 1103 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 GJB4Q9NTQ9 266 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 PCDHB12Q9Y5F1 795 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 PRUNE2Q8WUY3 3088 aa15.35■□□□□ 0.05
TCOF1-215ENST00000515516 PRRC2BQ5JSZ5 2229 aaKnown RBP15.35■□□□□ 0.05
TCOF1-215ENST00000515516 TBKBP1A7MCY6 615 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 C9IYK1 514 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 TBX3O15119 743 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 HOXA2O43364 376 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 DTNBO60941 627 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 QARSP47897 775 aaKnown RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 GPC3P51654 580 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 PPP2R5CQ13362 524 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 TARBP2Q15633 366 aaKnown RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 B3GNT9Q6UX72 402 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 EXOC8Q8IYI6 725 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 SLFN12Q8IYM2 578 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 OXER1Q8TDS5 423 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 ZNF668Q96K58 619 aaPredicted RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 GCOM2Q9BZD3 368 aaPredicted RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 ELAC1Q9H777 363 aaKnown RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 ALG13Q9NP73 1137 aaKnown RBP15.34■□□□□ 0.05
TCOF1-215ENST00000515516 KCNMB3Q9NPA1 279 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 TMEM161AQ9NX61 479 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 PLAGL2Q9UPG8 496 aa15.34■□□□□ 0.05
TCOF1-215ENST00000515516 CSPG5O95196 566 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 MMP1P03956 469 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 P4HBP07237 508 aaKnown RBP15.33■□□□□ 0.04
TCOF1-215ENST00000515516 LINC00271P0C7V0 271 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 DARSP14868 501 aaKnown RBP15.33■□□□□ 0.04
TCOF1-215ENST00000515516 GATMP50440 423 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 FAM189BP81408 668 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 FAM102BQ5T8I3 360 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 ABI1Q8IZP0 508 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 PABPC5Q96DU9 382 aaKnown RBP15.33■□□□□ 0.04
TCOF1-215ENST00000515516 INO80BQ9C086 356 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-215ENST00000515516 CLDND1Q9NY35 253 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 SUCLA2Q9P2R7 463 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-215ENST00000515516 FAM50BQ9Y247 325 aa15.33■□□□□ 0.04
TCOF1-215ENST00000515516 EML1O00423 815 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 FDPSP14324 419 aaKnown RBP15.32■□□□□ 0.04
TCOF1-215ENST00000515516 FOSBP53539 338 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 DSC3Q14574 896 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms