RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 SLFN12Q8IYM2 578 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 KIRREL3Q8IZU9 778 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 PRMT1Q99873 361 aaKnown RBP12.1□□□□□ -0.47
TCOF1-211ENST00000513346 MIS12Q9H081 205 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 LY9Q9HBG7 655 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 MLXIPLQ9NP71 852 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 AMACRQ9UHK6 382 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 GGT7Q9UJ14 662 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 ZNF148Q9UQR1 794 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 SNX1Q13596 522 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 TMEM154Q6P9G4 183 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 SGMS1Q86VZ5 419 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 PPP4R1Q8TF05 950 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 ZKSCAN4Q969J2 545 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-211ENST00000513346 CALR3Q96L12 384 aaKnown RBP12.1□□□□□ -0.47
TCOF1-211ENST00000513346 FGFR1OP2Q9NVK5 253 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 SMARCAL1Q9NZC9 954 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 DDX25Q9UHL0 483 aaKnown RBP12.1□□□□□ -0.47
TCOF1-211ENST00000513346 ZFP69BQ9UJL9 534 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 HPSEQ9Y251 543 aa12.1□□□□□ -0.47
TCOF1-211ENST00000513346 CDR2Q01850 454 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 PREPLQ4J6C6 727 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 TRIM42Q8IWZ5 723 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 AGGF1Q8N302 714 aaeCLIP12.09□□□□□ -0.478e-7■□□□□ 10.4
TCOF1-211ENST00000513346 CELF1Q92879 486 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 IWS1Q96ST2 819 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 DHX36Q9H2U1 1008 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 COL15A1P39059 1388 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 PREX1Q8TCU6 1659 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 TCP11X1B4DZS4 312 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 ZNF609O15014 1411 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 C21orf2O43822 256 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 RNF8O76064 485 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 HSPA9P38646 679 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 KCNB1Q14721 858 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 CCDC14Q49A88 953 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 DCUN1D2Q6PH85 259 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 ARHGEF1Q92888 912 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 ATP2A3Q93084 1043 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 COA1Q9GZY4 146 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 DMGDHQ9UI17 866 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 TRPC6Q9Y210 931 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 GDF11O95390 407 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 PRDX5P30044 214 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 RCAN1P53805 252 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 TBX2Q13207 712 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 DEPTORQ8TB45 409 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 CYTH2Q99418 400 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 ISCUQ9H1K1 167 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 CTCFP49711 727 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 PDXDC1Q6P996 788 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 NCAPG2Q86XI2 1143 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 SRRM1Q8IYB3 904 aaKnown RBP12.09□□□□□ -0.47
TCOF1-211ENST00000513346 TEKT4Q8WW24 435 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 KDM4CQ9H3R0 1056 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 MINPP1Q9UNW1 487 aa12.09□□□□□ -0.47
TCOF1-211ENST00000513346 CEMIPQ8WUJ3 1361 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 SSU72P8A0A1W2PR75 194 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 PABPN1LA6NDY0 278 aaKnown RBP12.08□□□□□ -0.48
TCOF1-211ENST00000513346 MIF4GDA9UHW6 222 aaKnown RBP12.08□□□□□ -0.48
TCOF1-211ENST00000513346 IGF2BP3O00425 579 aaKnown RBP eCLIP12.08□□□□□ -0.48
TCOF1-211ENST00000513346 SPAG7O75391 227 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 PRLRP16471 622 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 UNC13DQ70J99 1090 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 LONP2Q86WA8 852 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 ADSSL1Q8N142 457 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 PROM2Q8N271 834 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 PRPF38AQ8NAV1 312 aaKnown RBP12.08□□□□□ -0.48
TCOF1-211ENST00000513346 SPC25Q9HBM1 224 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 RAB20Q9NX57 234 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 VWDEQ8N2E2 1590 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 SYNGAP1Q96PV0 1343 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 USP17L3A6NCW0 530 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 USP17L4A6NCW7 530 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 RASA4BC9J798 803 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 RASA4O43374 803 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 RAD51CO43502 376 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 CD19P15391 556 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 NR1H3Q13133 447 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 XKR9Q5GH70 373 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 EPM2AIP1Q7L775 607 aaPredicted RBP12.08□□□□□ -0.48
TCOF1-211ENST00000513346 USP17L1Q7RTZ2 530 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 CEP70Q8NHQ1 597 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 DNAJC9Q8WXX5 260 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 GJA10Q969M2 543 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 BRIP1Q9BX63 1249 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 TRIM55Q9BYV6 548 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 PI4KBQ9UBF8 816 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 CPP00450 1065 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 GSTA1P08263 222 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 SKOR1P84550 965 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 USP49Q70CQ1 688 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 KCTD1Q719H9 257 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 RHOT2Q8IXI1 618 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 MTA3Q9BTC8 594 aa12.08□□□□□ -0.48
TCOF1-211ENST00000513346 M0QZ92 97 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ZWINTO95229 277 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 KRT19P08727 400 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 TNNI1P19237 187 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ATP2C1P98194 919 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms