RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 UNC45AQ9H3U1 944 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 CIZ1Q9ULV3 898 aaPredicted RBP18.67■□□□□ 0.58
TRIM54-203ENST00000485306 TRANK1O15050 2925 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 STX6O43752 255 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 LPXNO60711 386 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 C22orf31O95567 290 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 OATP04181 439 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 GCFC2P16383 781 aaKnown RBP18.66■□□□□ 0.58
TRIM54-203ENST00000485306 NFX1Q12986 1120 aaKnown RBP18.66■□□□□ 0.58
TRIM54-203ENST00000485306 ZNF710Q8N1W2 664 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 GDPD5Q8WTR4 605 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 TNFRSF25Q93038 417 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 GJA10Q969M2 543 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 C17orf80Q9BSJ5 609 aa18.66■□□□□ 0.58
TRIM54-203ENST00000485306 CUL9Q8IWT3 2517 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 PRUNE2Q8WUY3 3088 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 GPR182O15218 404 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 SLC37A4O43826 429 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 MARCH6O60337 910 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 RPS6KA5O75582 802 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 STAG3L1P0CL83 205 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 CRYBB1P53674 252 aaPredicted RBP18.65■□□□□ 0.58
TRIM54-203ENST00000485306 NUCB2P80303 420 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 AAK1Q2M2I8 961 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 EPC2Q52LR7 807 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 PPP4R3AQ6IN85 833 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 EFCAB12Q6NXP0 572 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 DIS3L2Q8IYB7 885 aaKnown RBP18.65■□□□□ 0.58
TRIM54-203ENST00000485306 ETNPPLQ8TBG4 499 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 FAM20AQ96MK3 541 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 ASB2Q96Q27 587 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 MAP7D2Q96T17 732 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 RWDD3Q9Y3V2 267 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 TTC3P53804 2025 aa18.65■□□□□ 0.58
TRIM54-203ENST00000485306 FAM205CA6NFA0 338 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 BTBD18B2RXH4 712 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 ZNF862O60290 1169 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 CCNT1O60563 726 aaKnown RBP18.64■□□□□ 0.57
TRIM54-203ENST00000485306 DDIT3P35638 169 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 PRKCEQ02156 737 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 PTPROQ16827 1216 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 TMEM192Q8IY95 271 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 FOXP1Q9H334 677 aaPredicted RBP18.64■□□□□ 0.57
TRIM54-203ENST00000485306 COG5Q9UP83 839 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 AKT3Q9Y243 479 aa18.64■□□□□ 0.57
TRIM54-203ENST00000485306 TBC1D8BQ0IIM8 1120 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 BTG3Q14201 252 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-203ENST00000485306 KIZQ2M2Z5 673 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 TMEM266Q2M3C6 531 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 XKR3Q5GH77 459 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 RTN4RL1Q86UN2 441 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-203ENST00000485306 NPAS4Q8IUM7 802 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 CDHR5Q9HBB8 845 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 KCNMB3Q9NPA1 279 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 LRFN2Q9ULH4 789 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 MTMR6Q9Y217 621 aa18.63■□□□□ 0.57
TRIM54-203ENST00000485306 NOC2LQ9Y3T9 749 aaKnown RBP18.63■□□□□ 0.57
TRIM54-203ENST00000485306 COL4A4P53420 1690 aaPredicted RBP18.63■□□□□ 0.57
TRIM54-203ENST00000485306 DENND3A2RUS2 1198 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 H3BNC9 293 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 TBX3O15119 743 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 DKC1O60832 514 aaKnown RBP eCLIP18.62■□□□□ 0.57
TRIM54-203ENST00000485306 DGKIO75912 1065 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 BAG4O95429 457 aaKnown RBP18.62■□□□□ 0.57
TRIM54-203ENST00000485306 VTNP04004 478 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 RB1P06400 928 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 GUCY1B3Q02153 619 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 GPM6BQ13491 265 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 UGCGQ16739 394 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 B3GNT9Q6UX72 402 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 ZNF689Q96CS4 500 aaPredicted RBP18.62■□□□□ 0.57
TRIM54-203ENST00000485306 NIFKQ9BYG3 293 aaKnown RBP18.62■□□□□ 0.57
TRIM54-203ENST00000485306 ERVK-5Q9HDB9 667 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 ST3GAL5Q9UNP4 418 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 ADGRA3Q8IWK6 1321 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 COL4A6Q14031 1691 aa18.62■□□□□ 0.57
TRIM54-203ENST00000485306 NLRC5Q86WI3 1866 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 VPS37CA5D8V6 355 aaPredicted RBP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 GPR32O75388 356 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 U2AF2P26368 475 aaKnown RBP eCLIP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 DNM2P50570 870 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 CLCN3P51790 818 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 NLRP11P59045 1033 aaKnown RBP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 PSMC5P62195 406 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 CDC42EP1Q00587 391 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 GNL2Q13823 731 aaKnown RBP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 SLFN12Q8IYM2 578 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 LINC01599Q8WXQ3 324 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 HLA-CQ95604 372 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 PPP1R16BQ96T49 567 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 OSMRQ99650 979 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 ZSCAN16Q9H4T2 348 aaPredicted RBP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 C1orf112Q9NSG2 853 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 SEPT9Q9UHD8 586 aaPredicted RBP18.61■□□□□ 0.57
TRIM54-203ENST00000485306 PCDHB7Q9Y5E2 793 aa18.61■□□□□ 0.57
TRIM54-203ENST00000485306 RALGAPA2Q2PPJ7 1873 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 DDX11L8A8MPP1 907 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 BRD1O95696 1058 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 CTNNB1P35222 781 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 BMPR1AP36894 532 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms