RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TEPSINQ96N21 525 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 CARD11Q9BXL7 1154 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 RTEL1Q9NZ71 1219 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 APOBEC2Q9Y235 224 aaKnown RBP8.38□□□□□ -1.07
USP40-213ENST00000483216 DUSP10Q9Y6W6 482 aa8.38□□□□□ -1.07
USP40-213ENST00000483216 A0A0G2JLL6 359 aaPredicted RBP8.37□□□□□ -1.07
USP40-213ENST00000483216 B4GALT3O60512 393 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 EYA4O95677 639 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 CPEP16870 476 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 CNGA1P29973 690 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 MYBPC3Q14896 1274 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 PRAMEF9Q5VWM5 478 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 ZNF662Q6ZS27 426 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 KANSL1Q7Z3B3 1105 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 PLEKHH3Q7Z736 793 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 FILIP1Q7Z7B0 1213 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 SLC5A5Q92911 643 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 C20orf173Q96LM9 149 aa8.37□□□□□ -1.07
USP40-213ENST00000483216 BTBD11A6QL63 1104 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 ULK1O75385 1050 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 PRPF6O94906 941 aaKnown RBP8.36□□□□□ -1.07
USP40-213ENST00000483216 BCAR1P56945 870 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 USP10Q14694 798 aaKnown RBP8.36□□□□□ -1.07
USP40-213ENST00000483216 SURF1Q15526 300 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 DDB1Q16531 1140 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 RALYLQ86SE5 291 aaKnown RBP8.36□□□□□ -1.07
USP40-213ENST00000483216 ADAM7Q9H2U9 754 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 INVSQ9Y283 1065 aa8.36□□□□□ -1.07
USP40-213ENST00000483216 ARID1BQ8NFD5 2236 aaPredicted RBP8.35□□□□□ -1.07
USP40-213ENST00000483216 HMGCRP04035 888 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 CANXP27824 592 aaKnown RBP8.35□□□□□ -1.07
USP40-213ENST00000483216 CNR2P34972 360 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 ID4P47928 161 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 KCNQ1P51787 676 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 NFKB2Q00653 900 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 ADCY2Q08462 1091 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 NOLC1Q14978 699 aaKnown RBP eCLIP8.35□□□□□ -1.07
USP40-213ENST00000483216 ZNF827Q17R98 1081 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 BROXQ5VW32 411 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 TRIM68Q6AZZ1 485 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 KIAA1841Q6NSI8 718 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 RPGRQ92834 1020 aaKnown RBP8.35□□□□□ -1.07
USP40-213ENST00000483216 ZNF496Q96IT1 587 aaPredicted RBP8.35□□□□□ -1.07
USP40-213ENST00000483216 POFUT1Q9H488 388 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 KCMF1Q9P0J7 381 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 MSRAQ9UJ68 235 aa8.35□□□□□ -1.07
USP40-213ENST00000483216 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.34□□□□□ -1.07
USP40-213ENST00000483216 ZNF888P0CJ79 500 aaPredicted RBP8.34□□□□□ -1.07
USP40-213ENST00000483216 POU3F3P20264 500 aaPredicted RBP8.34□□□□□ -1.07
USP40-213ENST00000483216 UBXN11Q5T124 520 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 FRMD7Q6ZUT3 714 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 ESPNLQ6ZVH7 1005 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 RASSF3Q86WH2 238 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 BCL6BQ8N143 479 aaPredicted RBP8.34□□□□□ -1.07
USP40-213ENST00000483216 MYL10Q9BUA6 226 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 CDC42EP3Q9UKI2 254 aa8.34□□□□□ -1.07
USP40-213ENST00000483216 MAFGO15525 162 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 PRICKLE3O43900 615 aaPredicted RBP8.33□□□□□ -1.08
USP40-213ENST00000483216 B4GALT4O60513 344 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 SESN3P58005 492 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 STAT4Q14765 748 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 NFIXQ14938 502 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 DGKDQ16760 1214 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 ZMAT1Q5H9K5 638 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 GPR155Q7Z3F1 870 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 BMP8AQ7Z5Y6 402 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 FERMT3Q86UX7 667 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 OR5AN1Q8NGI8 311 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 PITHD1Q9GZP4 211 aaPredicted RBP8.33□□□□□ -1.08
USP40-213ENST00000483216 SEMA4AQ9H3S1 761 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 SLC4A7Q9Y6M7 1214 aa8.33□□□□□ -1.08
USP40-213ENST00000483216 ELL2O00472 640 aaPredicted RBP8.32□□□□□ -1.08
USP40-213ENST00000483216 RAB11FIP3O75154 756 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 CTSWP56202 376 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 PPP2CBP62714 309 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 PPP2CAP67775 309 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 ARHGEF18Q6ZSZ5 1173 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 LARP4Q71RC2 724 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP40-213ENST00000483216 FAM126AQ9BYI3 521 aaPredicted RBP8.32□□□□□ -1.08
USP40-213ENST00000483216 KRTAP9-9Q9BYP9 154 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 KRTAP9-4Q9BYQ2 154 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 HAPLN2Q9GZV7 340 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 MS4A5Q9H3V2 200 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 SAE1Q9UBE0 346 aaPredicted RBP8.32□□□□□ -1.08
USP40-213ENST00000483216 PTPN22Q9Y2R2 807 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 VWA7Q9Y334 891 aa8.32□□□□□ -1.08
USP40-213ENST00000483216 NOC2LQ9Y3T9 749 aaKnown RBP8.32□□□□□ -1.08
USP40-213ENST00000483216 A0A0A6YYJ9 748 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 LAMTOR5O43504 91 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 APOL3O95236 402 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 PLATP00750 562 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 EPHB4P54760 987 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 UNQ6494/PRO21346Q6UXR6 183 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 CXorf38Q8TB03 319 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 DENND2AQ9ULE3 1009 aa8.31□□□□□ -1.08
USP40-213ENST00000483216 LCHNA4D1U4 455 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 GPR39O43194 453 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 KDM1AO60341 852 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 MEOX1P50221 254 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 STAT5BP51692 787 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms