RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 NXF1Q9UBU9 619 aaKnown RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CAPN11Q9UMQ6 739 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 SHANK3Q9BYB0 1731 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 ZNF394Q53GI3 561 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 MCTP2Q6DN12 878 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CLEC10AQ8IUN9 316 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 GLYCTKQ8IVS8 523 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CALN1Q9BXU9 219 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 SEPT9Q9UHD8 586 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 MAGED2Q9UNF1 606 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 ITGB4P16144 1822 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 KRT14P02533 472 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CA8P35219 290 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 KLK7P49862 253 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 IRX4P78413 519 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 BASP1P80723 227 aaKnown RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CUL1Q13616 776 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CLEC4GQ6UXB4 293 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 SRLQ86TD4 932 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 REXO1L1PQ8IX06 675 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 KMT5AQ9NQR1 393 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 LAMA4Q16363 1823 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 LRP6O75581 1613 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 CCDC188H7C350 402 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 NR3C1P04150 777 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 TRIM49P0CI25 452 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 TRIM49CP0CI26 452 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 EIF2AK2P19525 551 aaKnown RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 PEX3P56589 373 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 OSTNP61366 133 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 IGBP1P78318 339 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 GNPTABQ3T906 1256 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 TMCO4Q5TGY1 634 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 RASGRP2Q7LDG7 609 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 TXNRD3Q86VQ6 643 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 PDCD7Q8N8D1 485 aaKnown RBP11.6□□□□□ -0.55
CCDC40-204ENST00000397545 GOLPH3Q9H4A6 298 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 SEPT10Q9P0V9 454 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 GGT7Q9UJ14 662 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 SNX12Q9UMY4 172 aa11.6□□□□□ -0.55
CCDC40-204ENST00000397545 PLA2G4AP47712 749 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 CDAN1Q8IWY9 1227 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 SRRM1Q8IYB3 904 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 ACCSQ96QU6 501 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 PNPLA7Q6ZV29 1317 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 CRCPO75575 148 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 FBXW10Q5XX13 1052 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 ARHGEF18Q6ZSZ5 1173 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 SH2D3AQ9BRG2 576 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 ADAM33Q9BZ11 813 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 EHD2Q9NZN4 543 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 FBXL5Q9UKA1 691 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 TTC7AQ9ULT0 858 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 PVALEFA0A1B0GWK0 134 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 MRPS9P82933 396 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 TFAMQ00059 246 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 DPYDQ12882 1025 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 BRDTQ58F21 947 aaPredicted RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 ADSSL1Q8N142 457 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 GUF1Q8N442 669 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 LRRN4CLQ8ND94 238 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 RAD54LQ92698 747 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 ARHGEF1Q92888 912 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 WDR11Q9BZH6 1224 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 CNOT10Q9H9A5 744 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 BARHL2Q9NY43 387 aa11.59□□□□□ -0.55
CCDC40-204ENST00000397545 G3BP2Q9UN86 482 aaKnown RBP11.59□□□□□ -0.55
CCDC40-204ENST00000397545 GMNCA6NCL1 334 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 GH2P01242 217 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 KRT1P04264 644 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 KCNJ6P48051 423 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SLMAPQ14BN4 828 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SYDE2Q5VT97 1194 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 DCLK2Q8N568 766 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 TMEM60Q9H2L4 133 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 PAPPAQ13219 1627 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 ABCA3Q99758 1704 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 POLR2BP30876 1174 aaKnown RBP11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SERPINB6P35237 376 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 PDE1BQ01064 536 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SF3B3Q15393 1217 aaKnown RBP11.58□□□□□ -0.56
CCDC40-204ENST00000397545 TAF11Q15544 211 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 GLE1Q53GS7 698 aaKnown RBP11.58□□□□□ -0.56
CCDC40-204ENST00000397545 EEPD1Q7L9B9 569 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 RFX6Q8HWS3 928 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 BBOF1Q8ND07 529 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 OR2W6PQ8NHA6 318 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 PFDN4Q9NQP4 134 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 ANAPC7Q9UJX3 599 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 ROBO1Q9Y6N7 1651 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 A0A1W2PQC6 194 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 INO80B-WBP1J3KQ70 363 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 NOL3O60936 208 aaKnown RBP11.58□□□□□ -0.56
CCDC40-204ENST00000397545 RAD17O75943 681 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 SNX16P57768 344 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 BPIFB4P59827 614 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 PTPAQ15257 358 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 NIM1KQ8IY84 436 aa11.58□□□□□ -0.56
CCDC40-204ENST00000397545 PPP4R1Q8TF05 950 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms