RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 TRIM10Q9UDY6 481 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 GDAQ9Y2T3 454 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 MLH1P40692 756 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PROSER2Q86WR7 435 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 CAVIN3Q969G5 261 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TRIM11Q96F44 468 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 NDUFA13Q9P0J0 144 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PCNX1Q96RV3 2341 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 RNMTO43148 476 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ENO1P06733 434 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 FMR1Q06787 632 aaKnown RBP eCLIP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 KLHL25Q9H0H3 589 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 LIMA1Q9UHB6 759 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 IRS4O14654 1257 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 CHRNA3P32297 505 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 RCN1Q15293 331 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 KLC3Q6P597 504 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 SPATA5Q8NB90 893 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 CEP19Q96LK0 163 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 A1CFQ9NQ94 594 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 AP4S1Q9Y587 144 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 R3HDM1Q15032 1099 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CADPS2Q86UW7 1296 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TERB1Q8NA31 727 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 AGAP11Q8TF27 550 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 GJA10Q969M2 543 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NEURL1BA8MQ27 555 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 IPO5O00410 1097 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 MMP1P03956 469 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 SERPINB1P30740 379 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PPP2R5DQ14738 602 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CRELD2Q6UXH1 353 aaPredicted RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 RFX8Q6ZV50 586 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TEX13AQ9BXU3 409 aaPredicted RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TRPV6Q9H1D0 765 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 GCLCP48506 637 aaPredicted RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ADARP55265 1226 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TBCCQ15814 346 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 KIF28PB7ZC32 967 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 E9PMD0 336 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 STRNO43815 780 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 RFX6Q8HWS3 928 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ITFG2Q969R8 447 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 STX18Q9P2W9 335 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 MID2Q9UJV3 735 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ATP6V1B1P15313 513 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 LLGL1Q15334 1064 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PDIK1LQ8N165 341 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 HDAC11Q96DB2 347 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 LBHD1Q9BQE6 289 aaPredicted RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ING2Q9H160 280 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 DTNAQ9Y4J8 743 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 FAM47DPA6NHR8 397 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 UBOX5O94941 541 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 MAPK4P31152 587 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TMEM259Q4ZIN3 620 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 SPOPLQ6IQ16 392 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TRIM74Q86UV6 250 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TRIM73Q86UV7 250 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NUP85Q9BW27 656 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ATP9AO75110 1047 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TARSP26639 723 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ALDH18A1P54886 795 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NECTIN1Q15223 517 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PLBD2Q8NHP8 589 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PYROXD1Q8WU10 500 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 SH3BP5O60239 455 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ZCCHC18P0CG32 403 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ANXA13P27216 316 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CASP1P29466 404 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TFAP4Q01664 338 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 MRPL28Q13084 256 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ADRM1Q16186 407 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NEK8Q86SG6 692 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PLD3Q8IV08 490 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 DNAJC7Q99615 494 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CFAP74Q9C0B2 1584 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NR2F2P24468 414 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 JAMLQ86YT9 394 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PI4K2BQ8TCG2 481 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CDKL2Q92772 493 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 SENP1Q9P0U3 644 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TUBE1Q9UJT0 475 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ADGRL2O95490 1459 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 TRIM49BA6NDI0 452 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 RAD51CO43502 376 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 THOC5Q13769 683 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 ZNF804AQ7Z570 1209 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 IFNL2Q8IZJ0 200 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 NMD3Q96D46 503 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 UIMC1Q96RL1 719 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 EYA1Q99502 592 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 CCDC134Q9H6E4 229 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 SRPRBQ9Y5M8 271 aaKnown RBP6.49□□□□□ -1.37
VPS13B-203ENST00000358544 GRIN2AQ12879 1464 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 COPEO14579 308 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 PKD2L1Q9P0L9 805 aa6.49□□□□□ -1.37
VPS13B-203ENST00000358544 WDR46O15213 610 aaKnown RBP6.48□□□□□ -1.37
VPS13B-203ENST00000358544 MFAP3P55082 362 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms