RNA–Protein interactions for RNA: YKL042W

SPC42, Transcript of Central plaque component of spindle pole body (SPB), yeast

Gene SPC42, Length 1,092 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC42	YKL042W	RGS2	Q99188	309 aa		4.66	□□□□□ -1.66
SPC42	YKL042W	PIS1	P06197	220 aa	Known RBP	4.65	□□□□□ -1.67
SPC42	YKL042W	RAD5	P32849	1169 aa	Predicted RBP	4.65	□□□□□ -1.67
SPC42	YKL042W	YHK8	P38776	514 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	END3	P39013	349 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	MNN9	P39107	395 aa	Known RBP	4.65	□□□□□ -1.67
SPC42	YKL042W	SEC27	P41811	889 aa	Known RBP	4.65	□□□□□ -1.67
SPC42	YKL042W	LCB3	P47013	409 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	MTM1	P53320	366 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	PRM6	Q04705	352 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	PBA1	Q05778	276 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	MSC3	Q05812	728 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	YOL075C	Q08234	1294 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	APC5	Q08683	685 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	EAF3	Q12432	401 aa		4.65	□□□□□ -1.67
SPC42	YKL042W	PFK27	Q12471	397 aa	Predicted RBP	4.65	□□□□□ -1.67
SPC42	YKL042W	DBP3	P20447	523 aa	Known RBP	4.64	□□□□□ -1.67
SPC42	YKL042W	KAR9	P32526	644 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	RTC2	P38279	296 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	NDT80	P38830	627 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	KRE9	P39005	276 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	YMR134W	P40207	237 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	CWC25	P53854	179 aa	Known RBP	4.64	□□□□□ -1.67
SPC42	YKL042W	YMR102C	Q03177	834 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	GAT3	Q07928	141 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	SMC5	Q08204	1093 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	YDR262W	Q12331	272 aa		4.64	□□□□□ -1.67
SPC42	YKL042W	MEX67	Q99257	599 aa	Known RBP	4.64	□□□□□ -1.67
SPC42	YKL042W	NAM2	P11325	894 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	MXR2	P25566	168 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	CIN8	P27895	1000 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	ZUO1	P32527	433 aa	Known RBP	4.63	□□□□□ -1.67
SPC42	YKL042W	YHR182W	P38870	785 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	PTH1	P38876	190 aa	Known RBP	4.63	□□□□□ -1.67
SPC42	YKL042W	CCT4	P39078	528 aa	Known RBP	4.63	□□□□□ -1.67
SPC42	YKL042W	MAM33	P40513	266 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	SCS3	P53012	380 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	MTQ1	P53944	314 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	CAB5	Q03941	241 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	NAT4	Q04751	285 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	CUR1	Q06469	252 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	HTZ1	Q12692	134 aa	Known RBP	4.63	□□□□□ -1.67
SPC42	YKL042W	YMR230W-A	Q3E7B5	62 aa		4.63	□□□□□ -1.67
SPC42	YKL042W	HHF1	P02309	103 aa	Known RBP	4.62	□□□□□ -1.67
SPC42	YKL042W	FAR1	P21268	830 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	POP5	P28005	173 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	MRPS5	P33759	307 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	YBL059W	P34224	193 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	SWC5	P38326	303 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	YHR131C	P38835	850 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	RTT105	P40063	208 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	AIM24	P47127	394 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	LST7	P53237	242 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	TDA1	Q03533	586 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	MRPL35	Q06678	367 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	YOR387C	Q08910	206 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	YGK3	Q12222	375 aa	Predicted RBP	4.62	□□□□□ -1.67
SPC42	YKL042W	ERV2	Q12284	196 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	APC2	Q12440	853 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	PCL9	Q12477	304 aa		4.62	□□□□□ -1.67
SPC42	YKL042W	ARF2	P19146	181 aa	Known RBP	4.61	□□□□□ -1.67
SPC42	YKL042W	YPS1	P32329	569 aa		4.61	□□□□□ -1.67
SPC42	YKL042W	ECM8	P38246	354 aa		4.61	□□□□□ -1.67
SPC42	YKL042W	ATG7	P38862	630 aa		4.61	□□□□□ -1.67
SPC42	YKL042W	YHR218W	P38899	603 aa		4.61	□□□□□ -1.67
SPC42	YKL042W	ELP3	Q02908	557 aa	Known RBP	4.61	□□□□□ -1.67
SPC42	YKL042W	YIL002W-A	Q3E7Z5	69 aa		4.61	□□□□□ -1.67
SPC42	YKL042W	DET1	Q99288	334 aa	Known RBP	4.61	□□□□□ -1.67
SPC42	YKL042W	RPS8A	P0CX39	200 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	RPS8B	P0CX40	200 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	SPT15	P13393	240 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	PUT4	P15380	627 aa		4.6	□□□□□ -1.67
SPC42	YKL042W	DEG1	P31115	442 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	HAC1	P41546	238 aa		4.6	□□□□□ -1.67
SPC42	YKL042W	KEG1	P43614	200 aa		4.6	□□□□□ -1.67
SPC42	YKL042W	AIP1	P46680	615 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	MPP10	P47083	593 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	RTN1	Q04947	295 aa	Known RBP	4.6	□□□□□ -1.67
SPC42	YKL042W	BUR2	Q05949	395 aa		4.6	□□□□□ -1.67
SPC42	YKL042W	YLH47	Q06493	454 aa		4.6	□□□□□ -1.67
SPC42	YKL042W	GAL7	P08431	366 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	UTR1	P21373	530 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
SPC42	YKL042W	MYO3	P36006	1272 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	PEX32	P38292	413 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	RBG1	P39729	369 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	BTT1	P40314	149 aa	Predicted RBP	4.59	□□□□□ -1.67
SPC42	YKL042W	YJR030C	P47101	745 aa		4.59	□□□□□ -1.67
SPC42	YKL042W	TRF5	P48561	642 aa	Known RBP	4.59	□□□□□ -1.67
SPC42	YKL042W	EGD1	Q02642	157 aa	Known RBP	4.59	□□□□□ -1.67
SPC42	YKL042W	RPL18A	P0CX49	186 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	RPL18B	P0CX50	186 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	DAL2	P25335	343 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	ARO2	P28777	376 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	PPQ1	P32945	549 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	SPO23	P33757	523 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	EBP2	P36049	427 aa	Known RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	IST2	P38250	946 aa		4.58	□□□□□ -1.68
SPC42	YKL042W	LOC1	P43586	204 aa	Predicted RBP	4.58	□□□□□ -1.68
SPC42	YKL042W	YJR085C	P47131	105 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms