RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W TY2B-BQ12491 1770 aa5.07□□□□□ -1.6
PRP40YKL012W YOR1P53049 1477 aa5.07□□□□□ -1.6
PRP40YKL012W MNS1P32906 549 aa5.06□□□□□ -1.6
PRP40YKL012W GPX2P38143 162 aa5.06□□□□□ -1.6
PRP40YKL012W RTC2P38279 296 aa5.06□□□□□ -1.6
PRP40YKL012W RIB4P50861 169 aaPredicted RBP5.06□□□□□ -1.6
PRP40YKL012W ECM18Q04623 453 aa5.06□□□□□ -1.6
PRP40YKL012W YOL075CQ08234 1294 aa5.06□□□□□ -1.6
PRP40YKL012W RPO31P04051 1460 aa5.06□□□□□ -1.6
PRP40YKL012W CPR1P14832 162 aaKnown RBP5.06□□□□□ -1.6
PRP40YKL012W MXR2P25566 168 aa5.06□□□□□ -1.6
PRP40YKL012W ZUO1P32527 433 aaKnown RBP5.06□□□□□ -1.6
PRP40YKL012W MTC6P38849 526 aa5.06□□□□□ -1.6
PRP40YKL012W SEC9P40357 651 aa5.06□□□□□ -1.6
PRP40YKL012W ABM1P47146 123 aa5.06□□□□□ -1.6
PRP40YKL012W DBP6P53734 629 aaKnown RBP5.06□□□□□ -1.6
PRP40YKL012W MCK1P21965 375 aaKnown RBP5.05□□□□□ -1.6
PRP40YKL012W YPS1P32329 569 aa5.05□□□□□ -1.6
PRP40YKL012W PHA2P32452 334 aa5.05□□□□□ -1.6
PRP40YKL012W MUD1P32605 298 aaKnown RBP5.05□□□□□ -1.6
PRP40YKL012W MRP4P32902 394 aa5.05□□□□□ -1.6
PRP40YKL012W MDM31P38880 579 aa5.05□□□□□ -1.6
PRP40YKL012W PNC1P53184 216 aaKnown RBP5.05□□□□□ -1.6
PRP40YKL012W YMR111CQ04461 462 aaPredicted RBP5.05□□□□□ -1.6
PRP40YKL012W RTT103Q05543 409 aa5.05□□□□□ -1.6
PRP40YKL012W MRPL35Q06678 367 aa5.05□□□□□ -1.6
PRP40YKL012W MRPL23Q12487 163 aaPredicted RBP5.05□□□□□ -1.6
PRP40YKL012W RGS2Q99188 309 aa5.05□□□□□ -1.6
PRP40YKL012W YCF1P39109 1515 aaKnown RBP5.04□□□□□ -1.6
PRP40YKL012W MSS116P15424 664 aaKnown RBP5.04□□□□□ -1.6
PRP40YKL012W GEP4P38812 185 aa5.04□□□□□ -1.6
PRP40YKL012W AIP1P46680 615 aaKnown RBP5.04□□□□□ -1.6
PRP40YKL012W VOA1P53262 265 aa5.04□□□□□ -1.6
PRP40YKL012W SPO19Q03029 223 aa5.04□□□□□ -1.6
PRP40YKL012W NAT4Q04751 285 aa5.04□□□□□ -1.6
PRP40YKL012W VAC14Q06708 880 aa5.04□□□□□ -1.6
PRP40YKL012W MYO4P32492 1471 aa5.04□□□□□ -1.6
PRP40YKL012W SUP35P05453 685 aaKnown RBP5.04□□□□□ -1.6
PRP40YKL012W HEM15P16622 393 aa5.04□□□□□ -1.6
PRP40YKL012W BUD2P33314 1104 aa5.04□□□□□ -1.6
PRP40YKL012W MRPS5P33759 307 aa5.04□□□□□ -1.6
PRP40YKL012W YHR131CP38835 850 aa5.04□□□□□ -1.6
PRP40YKL012W YJL213WP40896 331 aa5.04□□□□□ -1.6
PRP40YKL012W WSC2P53832 503 aa5.04□□□□□ -1.6
PRP40YKL012W RRG8Q06109 277 aa5.04□□□□□ -1.6
PRP40YKL012W MDM36Q06820 579 aa5.04□□□□□ -1.6
PRP40YKL012W NDE2Q07500 545 aa5.04□□□□□ -1.6
PRP40YKL012W SHS1Q07657 551 aa5.04□□□□□ -1.6
PRP40YKL012W APC5Q08683 685 aa5.04□□□□□ -1.6
PRP40YKL012W UFD4P33202 1483 aa5.03□□□□□ -1.6
PRP40YKL012W RPL18AP0CX49 186 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W RPL18BP0CX50 186 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W SAR1P20606 190 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W FAR1P21268 830 aa5.03□□□□□ -1.6
PRP40YKL012W CIN8P27895 1000 aa5.03□□□□□ -1.6
PRP40YKL012W TIR2P33890 251 aa5.03□□□□□ -1.6
PRP40YKL012W CCT4P39078 528 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W MSO1P53604 210 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W GRS2Q06817 618 aa5.03□□□□□ -1.6
PRP40YKL012W AHC1Q12433 566 aa5.03□□□□□ -1.6
PRP40YKL012W PAA1Q12447 191 aaKnown RBP5.03□□□□□ -1.6
PRP40YKL012W DCP1Q12517 231 aaPredicted RBP5.03□□□□□ -1.6
PRP40YKL012W UGA1P17649 471 aa5.02□□□□□ -1.61
PRP40YKL012W PEX32P38292 413 aa5.02□□□□□ -1.61
PRP40YKL012W BTT1P40314 149 aaPredicted RBP5.02□□□□□ -1.61
PRP40YKL012W CDC40P40968 455 aaPredicted RBP5.02□□□□□ -1.61
PRP40YKL012W GCD14P46959 383 aaPredicted RBP5.02□□□□□ -1.61
PRP40YKL012W AFT2Q08957 416 aa5.02□□□□□ -1.61
PRP40YKL012W YLR108CQ12259 485 aa5.02□□□□□ -1.61
PRP40YKL012W APC2Q12440 853 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-HO13535 1793 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-DR5P0C2I2 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-DR6P0C2I3 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-LR2P0C2I5 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-LR3P0C2I6 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TY1B-PR1P0C2I9 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TY1B-PR2P0C2J0 1756 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-PR3P0C2J1 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TY1B-JR1P47098 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-ML2Q03434 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TY1B-ER1Q03612 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-ML1Q04711 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TY1B-GR2Q12269 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-OLQ12273 1755 aa5.02□□□□□ -1.61
PRP40YKL012W TY1B-PLQ12414 1755 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TOP2P06786 1428 aaKnown RBP5.02□□□□□ -1.61
PRP40YKL012W TRM732Q03496 1420 aa5.02□□□□□ -1.61
PRP40YKL012W PAD1P33751 242 aaKnown RBP RIP-Chip data5.01□□□□□ -1.61not detected
PRP40YKL012W COX14P39103 70 aa5.01□□□□□ -1.61
PRP40YKL012W LST7P53237 242 aa5.01□□□□□ -1.61
PRP40YKL012W TRM112P53738 135 aaPredicted RBP5.01□□□□□ -1.61
PRP40YKL012W ERV41Q04651 352 aa5.01□□□□□ -1.61
PRP40YKL012W GAT3Q07928 141 aa5.01□□□□□ -1.61
PRP40YKL012W TY1B-BRQ12193 1756 aa5.01□□□□□ -1.61
PRP40YKL012W TY1B-GR3Q12316 1755 aa5.01□□□□□ -1.61
PRP40YKL012W TY1B-ORQ92393 1755 aa5.01□□□□□ -1.61
PRP40YKL012W ARF2P19146 181 aaKnown RBP5.01□□□□□ -1.61
PRP40YKL012W UTR1P21373 530 aa5.01□□□□□ -1.61
PRP40YKL012W YHK8P38776 514 aa5.01□□□□□ -1.61
PRP40YKL012W SEC27P41811 889 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms