RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W TRM13Q12383 476 aa4.1□□□□□ -1.75
PRE9YGR135W CBP2P03874 630 aaPredicted RBP4.09□□□□□ -1.75
PRE9YGR135W COX4P04037 155 aa4.09□□□□□ -1.75
PRE9YGR135W HIP1P06775 603 aa4.09□□□□□ -1.75
PRE9YGR135W PDE2P06776 526 aa4.09□□□□□ -1.75
PRE9YGR135W WHI2P12611 486 aa4.09□□□□□ -1.75
PRE9YGR135W NMT1P14743 455 aa4.09□□□□□ -1.75
PRE9YGR135W HSP26P15992 214 aaKnown RBP RIP-Chip data4.09□□□□□ -1.75not detected
PRE9YGR135W SEN2P16658 377 aa4.09□□□□□ -1.75
PRE9YGR135W ERG4P25340 473 aa4.09□□□□□ -1.75
PRE9YGR135W YCL068CP25593 260 aa4.09□□□□□ -1.75
PRE9YGR135W IMG1P25626 169 aa4.09□□□□□ -1.75
PRE9YGR135W PTC6P25646 442 aa4.09□□□□□ -1.75
PRE9YGR135W PRP21P32524 280 aaPredicted RBP4.09□□□□□ -1.75
PRE9YGR135W RML2P32611 393 aa4.09□□□□□ -1.75
PRE9YGR135W YMC2P38087 329 aa4.09□□□□□ -1.75
PRE9YGR135W ADH5P38113 351 aaKnown RBP4.09□□□□□ -1.75
PRE9YGR135W THI2P38141 450 aa4.09□□□□□ -1.75
PRE9YGR135W ICS2P38284 255 aa4.09□□□□□ -1.75
PRE9YGR135W SLX1P38324 304 aa4.09□□□□□ -1.75
PRE9YGR135W YHI9P38765 294 aa4.09□□□□□ -1.75
PRE9YGR135W FAD1P38913 306 aa4.09□□□□□ -1.75
PRE9YGR135W SER3P40054 469 aa4.09□□□□□ -1.75
PRE9YGR135W OSW5P40219 148 aa4.09□□□□□ -1.75
PRE9YGR135W HAM1P47119 197 aaKnown RBP4.09□□□□□ -1.75
PRE9YGR135W HOC1P47124 396 aa4.09□□□□□ -1.75
PRE9YGR135W YGR127WP53275 312 aa4.09□□□□□ -1.75
PRE9YGR135W YNR068CP53754 272 aa4.09□□□□□ -1.75
PRE9YGR135W SLM2P53955 656 aa4.09□□□□□ -1.75
PRE9YGR135W EFM6P53970 246 aa4.09□□□□□ -1.75
PRE9YGR135W SPR6Q01684 191 aa4.09□□□□□ -1.75
PRE9YGR135W CSN9Q03981 162 aa4.09□□□□□ -1.75
PRE9YGR135W ARP10Q04549 284 aa4.09□□□□□ -1.75
PRE9YGR135W COX20Q04935 205 aa4.09□□□□□ -1.75
PRE9YGR135W YLR413WQ06689 675 aa4.09□□□□□ -1.75
PRE9YGR135W MDM36Q06820 579 aa4.09□□□□□ -1.75
PRE9YGR135W YOL019WQ08157 551 aa4.09□□□□□ -1.75
PRE9YGR135W SGT1Q08446 395 aa4.09□□□□□ -1.75
PRE9YGR135W FRE3Q08905 711 aa4.09□□□□□ -1.75
PRE9YGR135W SAM4Q08985 325 aaKnown RBP4.09□□□□□ -1.75
PRE9YGR135W INP53Q12271 1107 aa4.09□□□□□ -1.75
PRE9YGR135W MDY2Q12285 212 aa4.09□□□□□ -1.75
PRE9YGR135W YDR061WQ12298 539 aa4.09□□□□□ -1.75
PRE9YGR135W YPL119C-AQ3E751 87 aa4.09□□□□□ -1.75
PRE9YGR135W SUC2P00724 532 aa4.08□□□□□ -1.76
PRE9YGR135W NSP1P14907 823 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W MET16P18408 261 aaPredicted RBP4.08□□□□□ -1.76
PRE9YGR135W ART10P18634 518 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W DBR1P24309 405 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W GRR1P24814 1151 aa4.08□□□□□ -1.76
PRE9YGR135W CHA1P25379 360 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W IMP3P32899 183 aaPredicted RBP4.08□□□□□ -1.76
PRE9YGR135W PPQ1P32945 549 aa4.08□□□□□ -1.76
PRE9YGR135W ASK1P35734 292 aa4.08□□□□□ -1.76
PRE9YGR135W SPC34P36131 295 aa4.08□□□□□ -1.76
PRE9YGR135W ROT2P38138 954 aa4.08□□□□□ -1.76
PRE9YGR135W YPT10P38146 199 aa4.08□□□□□ -1.76
PRE9YGR135W KEL1P38853 1164 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W YHR182WP38870 785 aa4.08□□□□□ -1.76
PRE9YGR135W AIM18P38884 321 aa4.08□□□□□ -1.76
PRE9YGR135W IPT1P38954 527 aa4.08□□□□□ -1.76
PRE9YGR135W FHL1P39521 936 aa4.08□□□□□ -1.76
PRE9YGR135W SOP4P39543 234 aaPredicted RBP4.08□□□□□ -1.76
PRE9YGR135W UIP3P39547 235 aa4.08□□□□□ -1.76
PRE9YGR135W RBG1P39729 369 aa4.08□□□□□ -1.76
PRE9YGR135W YEL020CP39994 560 aa4.08□□□□□ -1.76
PRE9YGR135W YIL089WP40500 205 aa4.08□□□□□ -1.76
PRE9YGR135W VMA13P41807 478 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W PMT6P42934 759 aa4.08□□□□□ -1.76
PRE9YGR135W YGR210CP42942 411 aa4.08□□□□□ -1.76
PRE9YGR135W RRT5P43607 289 aa4.08□□□□□ -1.76
PRE9YGR135W SCD6P45978 349 aaKnown RBP RIP-Chip data4.08□□□□□ -1.76not detected
PRE9YGR135W YGR149WP48236 432 aa4.08□□□□□ -1.76
PRE9YGR135W MND1P53102 219 aa4.08□□□□□ -1.76
PRE9YGR135W YNL092WP53934 400 aa4.08□□□□□ -1.76
PRE9YGR135W LSM3P57743 89 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W LAP3Q01532 483 aaKnown RBP RIP-Chip data4.08□□□□□ -1.76not detected
PRE9YGR135W MUK1Q02866 612 aa4.08□□□□□ -1.76
PRE9YGR135W PFA5Q03289 374 aa4.08□□□□□ -1.76
PRE9YGR135W SNU56Q03782 492 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W TRM12Q04235 462 aa4.08□□□□□ -1.76
PRE9YGR135W APC4Q04601 652 aa4.08□□□□□ -1.76
PRE9YGR135W RRP45Q05636 305 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W DBP9Q06218 594 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W NRT1Q08485 598 aa4.08□□□□□ -1.76
PRE9YGR135W RAX1Q08760 435 aa4.08□□□□□ -1.76
PRE9YGR135W MRN1Q08925 612 aaKnown RBP RIP-Chip data4.08□□□□□ -1.76not detected
PRE9YGR135W ATP16Q12165 160 aa4.08□□□□□ -1.76
PRE9YGR135W LEU9Q12166 604 aaKnown RBP4.08□□□□□ -1.76
PRE9YGR135W LCB4Q12246 624 aa4.08□□□□□ -1.76
PRE9YGR135W ATG34Q12292 412 aa4.08□□□□□ -1.76
PRE9YGR135W TRM10Q12400 293 aa4.08□□□□□ -1.76
PRE9YGR135W YBR298C-AQ8TGK4 73 aa4.08□□□□□ -1.76
PRE9YGR135W ASP3-2P0CX77 362 aa4.07□□□□□ -1.76
PRE9YGR135W ASP3-3P0CX78 362 aa4.07□□□□□ -1.76
PRE9YGR135W ASP3-4P0CX79 362 aa4.07□□□□□ -1.76
PRE9YGR135W ASP3-1P0CZ17 362 aa4.07□□□□□ -1.76
PRE9YGR135W SAM1P10659 382 aaKnown RBP4.07□□□□□ -1.76
PRE9YGR135W STE4P18851 423 aa4.07□□□□□ -1.76
PRE9YGR135W YAP1P19880 650 aaKnown RBP4.07□□□□□ -1.76
Retrieved 100 of 5,963 RNA–protein pairs in 59.4 ms