RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM1	YBR263W	ENT2	Q05785	613 aa		5.24	□□□□□ -1.57
SHM1	YBR263W	TMA10	Q06177	86 aa		5.24	□□□□□ -1.57
SHM1	YBR263W	NDL1	Q06568	189 aa		5.24	□□□□□ -1.57
SHM1	YBR263W	GPN2	Q08726	347 aa	Predicted RBP	5.24	□□□□□ -1.57
SHM1	YBR263W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	5.24	□□□□□ -1.57	not detected
SHM1	YBR263W	SKS1	Q12505	502 aa		5.24	□□□□□ -1.57
SHM1	YBR263W	YKL033W-A	Q86ZR7	236 aa		5.24	□□□□□ -1.57
SHM1	YBR263W	FAS1	P07149	2051 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	CYR1	P08678	2026 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	RPL24A	P04449	155 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	HOM3	P10869	527 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	GAL3	P13045	520 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	MER1	P16523	270 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	RPB5	P20434	215 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	STP22	P25604	385 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	CMK1	P27466	446 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	LHP1	P33399	275 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	MSN2	P33748	704 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	SKG1	P36169	355 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	MBP1	P39678	833 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	RSP5	P39940	809 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	YEL020C	P39994	560 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	MSE1	P48525	536 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	LCL3	P53153	274 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	YGR079W	P53249	370 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	PEX25	Q02969	394 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	SVL3	Q03088	825 aa	Known RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	UGO1	Q03327	502 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	YKU80	Q04437	629 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	VID22	Q05934	901 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	YPR174C	Q06616	221 aa	Predicted RBP	5.23	□□□□□ -1.57
SHM1	YBR263W	YEH1	Q07804	573 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	FDH1	Q08911	376 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	ULA1	Q12059	462 aa		5.23	□□□□□ -1.57
SHM1	YBR263W	COX1	P00401	534 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	RAD7	P06779	565 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	PUT2	P07275	575 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	ZWF1	P11412	505 aa	Known RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	AAC3	P18238	307 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	YJU2	P28320	278 aa	Predicted RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	FAA2	P39518	744 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	PZF1	P39933	429 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	YJL068C	P40363	299 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	DIM1	P41819	318 aa	Known RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	ATP22	P50273	684 aa	Predicted RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	PBP1	P53297	722 aa	Known RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	GPI11	Q06636	219 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	THP1	Q08231	455 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	WTM1	Q12363	437 aa	Known RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	APC2	Q12440	853 aa		5.22	□□□□□ -1.57
SHM1	YBR263W	GCN1	P33892	2672 aa	Known RBP	5.22	□□□□□ -1.57
SHM1	YBR263W	CDC26	P14724	124 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	CMK2	P22517	447 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	RPS1B	P23248	255 aa	Known RBP	5.21	□□□□□ -1.58
SHM1	YBR263W	CLB3	P24870	427 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	YIM1	P28625	365 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	PEX3	P28795	441 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	PMT2	P31382	759 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	DCG1	P32460	244 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	RIB1	P38066	345 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	YBR241C	P38142	488 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	TSL1	P38427	1098 aa	Known RBP	5.21	□□□□□ -1.58
SHM1	YBR263W	TRR2	P38816	342 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	VPS52	P39904	641 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	BAP3	P41815	604 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	MAL11	P53048	616 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	TPC1	P53257	314 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	YNR068C	P53754	272 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	SPR6	Q01684	191 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	SRP1	Q02821	542 aa	Known RBP	5.21	□□□□□ -1.58
SHM1	YBR263W	ATP25	Q03153	612 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	PEX12	Q04370	399 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	SMA2	Q04658	369 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	ORM2	Q06144	216 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	YPR091C	Q06833	770 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	MHF2	Q3E829	80 aa		5.21	□□□□□ -1.58
SHM1	YBR263W	GLK1	P17709	500 aa	Known RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	MCK1	P21965	375 aa	Known RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	ARP2	P32381	391 aa	Known RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	TUL1	P36096	758 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	BET3	P36149	193 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	FES1	P38260	290 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	MPM1	P40364	252 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	ALB1	P47019	175 aa	Predicted RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	RPS12	P48589	143 aa	Known RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	GPI8	P49018	411 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	DSL1	P53847	754 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	RSM10	Q03201	203 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	YMR210W	Q03649	449 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	RAD30	Q04049	632 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	SPO77	Q06134	477 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	RRT8	Q08219	342 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	DCI1	Q08558	271 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	YOR365C	Q08844	703 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	YPL278C	Q08990	100 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	PFK27	Q12471	397 aa	Predicted RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	MDM12	Q92328	271 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	MF(ALPHA)1	P01149	165 aa		5.2	□□□□□ -1.58
SHM1	YBR263W	RPL20A	P0CX23	172 aa	Known RBP	5.2	□□□□□ -1.58
SHM1	YBR263W	RPL20B	P0CX24	172 aa	Predicted RBP	5.2	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms