RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 TIGD1Q96MW7 591 aa16.4■□□□□ 0.22
CD48-203ENST00000613788 LRRC27Q9C0I9 530 aa16.4■□□□□ 0.22
CD48-203ENST00000613788 BHMT2Q9H2M3 363 aa16.4■□□□□ 0.22
CD48-203ENST00000613788 BLOC1S4Q9NUP1 217 aa16.4■□□□□ 0.22
CD48-203ENST00000613788 RRN3P2A6NIE6 340 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 PLA2G4BP0C869 781 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 RARRES1P49788 294 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 AMPD3Q01432 767 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 NFKBIBQ15653 356 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 LONRF3Q496Y0 759 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 EXOC8Q8IYI6 725 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 C7orf31Q8N865 590 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 CYP26B1Q9NR63 512 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 DACT1Q9NYF0 836 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 SERTAD1Q9UHV2 236 aa16.39■□□□□ 0.21
CD48-203ENST00000613788 NRCAMQ92823 1304 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 SSBP05455 408 aaKnown RBP eCLIP16.38■□□□□ 0.21
CD48-203ENST00000613788 GNAT1P11488 350 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 INSRRP14616 1297 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 NPEPPSP55786 919 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 PPFIA1Q13136 1202 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 MCM6Q14566 821 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 NBPF20Q3BBV1 942 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 MTERF2Q49AM1 385 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 PLA2G4FQ68DD2 849 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 KRBA2Q6ZNG9 492 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 SEZ6LQ9BYH1 1024 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 STARD7Q9NQZ5 370 aa16.38■□□□□ 0.21
CD48-203ENST00000613788 HOOK1Q9UJC3 728 aaKnown RBP16.38■□□□□ 0.21
CD48-203ENST00000613788 COL1A2P08123 1366 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 A0A1W2PQ45 241 aaPredicted RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 A0A1W2PQY0 241 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 TMEM150BA6NC51 233 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 ACTN4O43707 911 aaKnown RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 SMIM10L2AP0DMW4 78 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 SMIM10L2BP0DMW5 78 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 SLC12A3P55017 1021 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 ITGA7Q13683 1181 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 DHX8Q14562 1220 aaKnown RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 TARBP2Q15633 366 aaKnown RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 SKOR2Q2VWA4 1001 aaPredicted RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 COL13A1Q5TAT6 717 aaPredicted RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 NFRKBQ6P4R8 1299 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 GPT2Q8TD30 523 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 LRRC15Q8TF66 581 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 JPH2Q9BR39 696 aaPredicted RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 TNMDQ9H2S6 317 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 BMP2KQ9NSY1 1161 aaPredicted RBP16.37■□□□□ 0.21
CD48-203ENST00000613788 KBTBD4Q9NVX7 518 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 KCND2Q9NZV8 630 aa16.37■□□□□ 0.21
CD48-203ENST00000613788 DGAT1O75907 488 aa16.36■□□□□ 0.21
CD48-203ENST00000613788 RFC5P40937 340 aa16.36■□□□□ 0.21
CD48-203ENST00000613788 PTPN11Q06124 597 aaPredicted RBP16.36■□□□□ 0.21
CD48-203ENST00000613788 GRIK4Q16099 956 aa16.36■□□□□ 0.21
CD48-203ENST00000613788 PADI6Q6TGC4 694 aa16.36■□□□□ 0.21
CD48-203ENST00000613788 ELOA2Q8IYF1 753 aaPredicted RBP16.36■□□□□ 0.21
CD48-203ENST00000613788 SH2D3AQ9BRG2 576 aa16.36■□□□□ 0.21
CD48-203ENST00000613788 MYH9P35579 1960 aaKnown RBP16.36■□□□□ 0.21
CD48-203ENST00000613788 A0A0U1RQG5 324 aaPredicted RBP16.35■□□□□ 0.21
CD48-203ENST00000613788 C17orf102A2RUQ5 167 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 MAGEB2O15479 319 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 POLGP54098 1239 aaPredicted RBP16.35■□□□□ 0.21
CD48-203ENST00000613788 IGBP1P78318 339 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 TBC1D8BQ0IIM8 1120 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 FAM47CQ5HY64 1035 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 RINT1Q6NUQ1 792 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 SESTD1Q86VW0 696 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 GPBP1Q86WP2 473 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 SLC7A3Q8WY07 619 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 PAGE5Q96GU1 130 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 SENP6Q9GZR1 1112 aaPredicted RBP16.35■□□□□ 0.21
CD48-203ENST00000613788 SETD4Q9NVD3 440 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 HDAC6Q9UBN7 1215 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 FRMPD3Q5JV73 1810 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 ZBTB42B2RXF5 422 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 MAFO75444 373 aaPredicted RBP16.35■□□□□ 0.21
CD48-203ENST00000613788 KRT18P05783 430 aaKnown RBP16.35■□□□□ 0.21
CD48-203ENST00000613788 MYL1P05976 194 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 CYP11B2P19099 503 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 AFMP43652 599 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 C1orf186Q6ZWK4 172 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 RETREG2Q8NC44 543 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 STAMQ92783 540 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 CEP89Q96ST8 783 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 TIPINQ9BVW5 301 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 GTF2IRD1Q9UHL9 959 aa16.35■□□□□ 0.21
CD48-203ENST00000613788 GRIN2DO15399 1336 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 GAS2O43903 313 aaKnown RBP16.34■□□□□ 0.21
CD48-203ENST00000613788 USO1O60763 962 aaKnown RBP16.34■□□□□ 0.21
CD48-203ENST00000613788 KLRC1P26715 233 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 MNX1P50219 401 aaPredicted RBP16.34■□□□□ 0.21
CD48-203ENST00000613788 KLHL40Q2TBA0 621 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 SH3RF1Q7Z6J0 888 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 SLC43A3Q8NBI5 491 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 MCPH1Q8NEM0 835 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 LMBR1Q8WVP7 490 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 TRAPPC12Q8WVT3 735 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 C7orf25Q9BPX7 421 aa16.34■□□□□ 0.21
CD48-203ENST00000613788 DHX33Q9H6R0 707 aaKnown RBP16.34■□□□□ 0.21
CD48-203ENST00000613788 ATP6V0A4Q9HBG4 840 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms