RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CACNB3P54284 484 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 PDIA5Q14554 519 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 SEPT2Q15019 361 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 MEI1Q5TIA1 1274 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 SLFN12Q8IYM2 578 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 DAGLBQ8NCG7 672 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 THRAP3Q9Y2W1 955 aaKnown RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 RASGRF2O14827 1237 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 BCRP11274 1271 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 GCFC2P16383 781 aaKnown RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 KCNMA1Q12791 1236 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 PPP4R3AQ6IN85 833 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 ZNF571Q7Z3V5 609 aaPredicted RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 KLHL29Q96CT2 875 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 MMTAG2Q9BU76 263 aaKnown RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 RASSF10A6NK89 507 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 PDHBP11177 359 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 PSMC2P35998 433 aaKnown RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 CETN2P41208 172 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 DRAP1Q14919 205 aaPredicted RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 NUGGCQ68CJ6 796 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 RAPGEF5Q92565 580 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 DHX36Q9H2U1 1008 aaKnown RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 TMBIM4Q9HC24 238 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 LEMD3Q9Y2U8 911 aa13.66□□□□□ -0.22
LIG1-221ENST00000613670 MYBP10242 640 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 FGFR4P22455 802 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 PMS2P54278 862 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 SKOR1P84550 965 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 ITIH3Q06033 890 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 MYO1EQ12965 1108 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 TRIM68Q6AZZ1 485 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 USTQ9Y2C2 406 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 NSMFQ6X4W1 530 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 IFT74Q96LB3 600 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 CNOT10Q9H9A5 744 aaKnown RBP13.65□□□□□ -0.22
LIG1-221ENST00000613670 UBE2TQ9NPD8 197 aaPredicted RBP13.65□□□□□ -0.22
LIG1-221ENST00000613670 RGL1Q9NZL6 768 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 CHN1P15882 459 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 MYL7Q01449 175 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 TNIP1Q15025 636 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 ZNF365Q70YC5 407 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 IQCKQ8N0W5 287 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 ZNF384Q8TF68 577 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 C8orf37Q96NL8 207 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 CD209Q9NNX6 404 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 OSGEPQ9NPF4 335 aa13.65□□□□□ -0.22
LIG1-221ENST00000613670 PDE6BP35913 854 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CASP4P49662 377 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 ATP11AP98196 1134 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SETDB1Q15047 1291 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CCDC6Q16204 474 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 GRIK5Q16478 980 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 GPATCH4Q5T3I0 446 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 HOOK2Q96ED9 719 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SH3GL2Q99962 352 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 GDF3Q9NR23 364 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 GAS7O60861 476 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CTNNA2P26232 953 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CALRP27797 417 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 NMT1P30419 496 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 FXR2P51116 673 aaKnown RBP eCLIP13.64□□□□□ -0.231e-6■■■■□ 25.2
LIG1-221ENST00000613670 EIF3BP55884 814 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 LRRC55Q6ZSA7 311 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 RPAINQ86UA6 219 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 FBXO11Q86XK2 927 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SLC35G2Q8TBE7 412 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CDCA7Q9BWT1 371 aaPredicted RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 SLC24A3Q9HC58 644 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 DDX20Q9UHI6 824 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 CEP83Q9Y592 693 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 MYH10P35580 1976 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 ZBTB5O15062 677 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 THAP12O43422 761 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 EVI5O60447 810 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SHOX2O60902 331 aaPredicted RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 ADCY8P40145 1251 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SP4Q02446 784 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 CYB5D1Q6P9G0 228 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 ZNF662Q6ZS27 426 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 KIAA0825Q8IV33 1275 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 SUGP1Q8IWZ8 645 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 TPCN2Q8NHX9 752 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 LRRC15Q8TF66 581 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 BICD1Q96G01 975 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 REEP2Q9BRK0 252 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 GLT8D2Q9H1C3 349 aa13.64□□□□□ -0.23
LIG1-221ENST00000613670 DBR1Q9UK59 544 aaKnown RBP13.64□□□□□ -0.23
LIG1-221ENST00000613670 ZNF844Q08AG5 666 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PPP2R5EQ16537 467 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 QRICH1Q2TAL8 776 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PPP4R3CPQ6ZMV5 832 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 ARMC9Q7Z3E5 817 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 SCFD1Q8WVM8 642 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 XPO6Q96QU8 1125 aaKnown RBP13.63□□□□□ -0.23
LIG1-221ENST00000613670 PRMT1Q99873 361 aaKnown RBP13.63□□□□□ -0.23
LIG1-221ENST00000613670 SLITRK6Q9H5Y7 841 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 LAMA4Q16363 1823 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 RSPH10B2B2RC85 870 aa13.63□□□□□ -0.23
LIG1-221ENST00000613670 PJA2O43164 708 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms