RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 KRBA2Q6ZNG9 492 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 CCDC155Q8N6L0 562 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 SLC43A3Q8NBI5 491 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 FAM200AQ8TCP9 573 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 ATP8B4Q8TF62 1192 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 ANP32BQ92688 251 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 DPF3Q92784 378 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 EIF2AK1Q9BQI3 630 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 PYM1Q9BRP8 204 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 PANK2Q9BZ23 570 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 ZSWIM4Q9H7M6 989 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 TUFT1Q9NNX1 390 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 GTF2IRD1Q9UHL9 959 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 USP25Q9UHP3 1055 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 HOOK1Q9UJC3 728 aaKnown RBP11.25□□□□□ -0.61
UPF1-213ENST00000601981 NR2E3Q9Y5X4 410 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 KDM3AQ9Y4C1 1321 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 COL1A2P08123 1366 aa11.25□□□□□ -0.61
UPF1-213ENST00000601981 EML1O00423 815 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 OATP04181 439 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 RPLP2P05387 115 aaKnown RBP11.24□□□□□ -0.61
UPF1-213ENST00000601981 MUTP22033 750 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 CDK7P50613 346 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 PRKCEQ02156 737 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 CCDC173Q0VFZ6 552 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 PLCB4Q15147 1175 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 LRRC26Q2I0M4 334 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 TRIM60Q495X7 471 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 XKR3Q5GH77 459 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 ZNF484Q5JVG2 852 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 KANK3Q6NY19 840 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 OTUD6AQ7L8S5 288 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 ANKRD33Q7Z3H0 272 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 TPH2Q8IWU9 490 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 EXOC8Q8IYI6 725 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 IGSF22Q8N9C0 903 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 RNF214Q8ND24 703 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 BANK1Q8NDB2 785 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 CNNM3Q8NE01 707 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 RASSF8Q8NHQ8 419 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 SNX29Q8TEQ0 813 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 SYMPKQ92797 1274 aaKnown RBP11.24□□□□□ -0.61
UPF1-213ENST00000601981 CCDC34Q96HJ3 373 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 CDK5RAP3Q96JB5 506 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 PCYT2Q99447 389 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 LXNQ9BS40 222 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 POLR3CQ9BUI4 534 aaPredicted RBP11.24□□□□□ -0.61
UPF1-213ENST00000601981 ANO10Q9NW15 660 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 KIAA1468Q9P260 1216 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 HDAC6Q9UBN7 1215 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 TELO2Q9Y4R8 837 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 PPME1Q9Y570 386 aa11.24□□□□□ -0.61
UPF1-213ENST00000601981 POLR2DO15514 142 aaKnown RBP11.23□□□□□ -0.61
UPF1-213ENST00000601981 SLC26A4O43511 780 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 ACTN4O43707 911 aaKnown RBP11.23□□□□□ -0.61
UPF1-213ENST00000601981 CLTBP09497 229 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 RPA1P27694 616 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 CCT6AP40227 531 aaKnown RBP11.23□□□□□ -0.61
UPF1-213ENST00000601981 UBA7P41226 1012 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 CYP4A11Q02928 519 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 TLE2Q04725 743 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 GRIK4Q16099 956 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 PTGISQ16647 500 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 LONRF3Q496Y0 759 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 ANO6Q4KMQ2 910 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 SPECC1Q5M775 1068 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 FAM126BQ8IXS8 530 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 C4orf19Q8IY42 314 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 KCTD17Q8N5Z5 321 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 CALML4Q96GE6 196 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 DYDC2Q96IM9 177 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 JPH2Q9BR39 696 aaPredicted RBP11.23□□□□□ -0.61
UPF1-213ENST00000601981 NT5C3AQ9H0P0 336 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 RNPEPQ9H4A4 650 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 SEPT9Q9UHD8 586 aaPredicted RBP11.23□□□□□ -0.61
UPF1-213ENST00000601981 TUBE1Q9UJT0 475 aa11.23□□□□□ -0.61
UPF1-213ENST00000601981 DNAH12Q6ZR08 3092 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 GRIN2DO15399 1336 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 MAGEB2O15479 319 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 B4GALT4O60513 344 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 LYPLA2O95372 231 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 INSRRP14616 1297 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 MYH11P35749 1972 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 IGBP1P78318 339 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 BFSP2Q13515 415 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 CTTNQ14247 550 aaKnown RBP11.22□□□□□ -0.61
UPF1-213ENST00000601981 ZRSR1Q15695 479 aaKnown RBP11.22□□□□□ -0.61
UPF1-213ENST00000601981 IL17AQ16552 155 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 UGCGQ16739 394 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 TAF2Q6P1X5 1199 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 TRMT1LQ7Z2T5 733 aaKnown RBP11.22□□□□□ -0.61
UPF1-213ENST00000601981 RSPH3Q86UC2 560 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 C7orf61Q8IZ16 206 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 RETREG2Q8NC44 543 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 NACC1Q96RE7 527 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 PPP1R9BQ96SB3 815 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 HSD17B14Q9BPX1 270 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 TANC1Q9C0D5 1861 aa11.22□□□□□ -0.61
UPF1-213ENST00000601981 PRDM5Q9NQX1 630 aaPredicted RBP11.22□□□□□ -0.61
UPF1-213ENST00000601981 TMEM39AQ9NV64 488 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms