RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 GUCY1B3Q02153 619 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 CUL4AQ13619 759 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 MBTPS1Q14703 1052 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 ZNF484Q5JVG2 852 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 POTEDQ86YR6 584 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 HAS1Q92839 578 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 GJA10Q969M2 543 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 GABBR1Q9UBS5 961 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 SAMM50Q9Y512 469 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.23■□□□□ 0.51
LSM4-206ENST00000600289 FAM86C2PA6NEL3 165 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 RSPH10B2B2RC85 870 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 ZBTB42B2RXF5 422 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 RSPH10BP0C881 870 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 U2AF2P26368 475 aaKnown RBP eCLIP18.22■□□□□ 0.51
LSM4-206ENST00000600289 MRE11P49959 708 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 CNKSR3Q6P9H4 555 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 RUFY4Q6ZNE9 571 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 MIER3Q7Z3K6 550 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 DEFB128Q7Z7B8 93 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 RSPH3Q86UC2 560 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 NOSTRINQ8IVI9 506 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 CEP131Q9UPN4 1083 aa18.22■□□□□ 0.51
LSM4-206ENST00000600289 PRRC2BQ5JSZ5 2229 aaKnown RBP18.22■□□□□ 0.51
LSM4-206ENST00000600289 SMIM35A0A1B0GVV1 85 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 CHMP2AO43633 222 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 ZNF862O60290 1169 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 NEMFO60524 1076 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 BAG4O95429 457 aaKnown RBP18.21■□□□□ 0.51
LSM4-206ENST00000600289 TRAPPC10P48553 1259 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 SPIRE1Q08AE8 756 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 MGAT3Q09327 533 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 OTOP2Q7RTS6 562 aa18.21■□□□□ 0.51
LSM4-206ENST00000600289 WNT7AO00755 349 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 EFCAB14O75071 495 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 OATP04181 439 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 GJB2P29033 226 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 IGBP1P78318 339 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 MTHFD1LQ6UB35 978 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 TRAPPC12Q8WVT3 735 aa18.2■□□□□ 0.5
LSM4-206ENST00000600289 FTOQ9C0B1 505 aaKnown RBP eCLIP18.2■□□□□ 0.5
LSM4-206ENST00000600289 KIF28PB7ZC32 967 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 C22orf31O95567 290 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 PRKCEQ02156 737 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 CALCRLQ16602 461 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 UGCGQ16739 394 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 PLEKHG4Q58EX7 1191 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 CKAP2LQ8IYA6 745 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 NME8Q8N427 588 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 DNAJB3Q8WWF6 145 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 MTMR9Q96QG7 549 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 SLC9A7Q96T83 725 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 TSPYL2Q9H2G4 693 aaPredicted RBP18.19■□□□□ 0.5
LSM4-206ENST00000600289 NRBP2Q9NSY0 501 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 SMC3Q9UQE7 1217 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 SLC4A7Q9Y6M7 1214 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 SQORQ9Y6N5 450 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 KDM3AQ9Y4C1 1321 aa18.19■□□□□ 0.5
LSM4-206ENST00000600289 ABHD14A-ACY1A0A1B0GW23 586 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 EML1O00423 815 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 DKC1O60832 514 aaKnown RBP eCLIP18.18■□□□□ 0.5
LSM4-206ENST00000600289 STBD1O95210 358 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 CHRNA1P02708 482 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 CTSHP09668 335 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 KLRC1P26715 233 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 MRPS6P82932 125 aaKnown RBP18.18■□□□□ 0.5
LSM4-206ENST00000600289 MKRN4PQ13434 485 aaPredicted RBP18.18■□□□□ 0.5
LSM4-206ENST00000600289 EPHA7Q15375 998 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 AAK1Q2M2I8 961 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 XKR3Q5GH77 459 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 PHOSPHO2Q8TCD6 241 aa18.18■□□□□ 0.5
LSM4-206ENST00000600289 NIFKQ9BYG3 293 aaKnown RBP18.18■□□□□ 0.5
LSM4-206ENST00000600289 NOL7Q9UMY1 257 aaKnown RBP18.18■□□□□ 0.5
LSM4-206ENST00000600289 MAGEB2O15479 319 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 MARCH6O60337 910 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 PSMC5P62195 406 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 GNL2Q13823 731 aaKnown RBP18.17■□□□□ 0.5
LSM4-206ENST00000600289 TARBP2Q15633 366 aaKnown RBP18.17■□□□□ 0.5
LSM4-206ENST00000600289 IER5Q5VY09 327 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 FAM43BQ6ZT52 329 aaPredicted RBP18.17■□□□□ 0.5
LSM4-206ENST00000600289 LINC01465Q8N7H1 131 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 APBB2Q92870 758 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 ZBTB10Q96DT7 871 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 NKX2-4Q9H2Z4 354 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 PCDHA12Q9UN75 941 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 YBX2Q9Y2T7 364 aaKnown RBP18.17■□□□□ 0.5
LSM4-206ENST00000600289 COL4A6Q14031 1691 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 MYH15Q9Y2K3 1946 aa18.17■□□□□ 0.5
LSM4-206ENST00000600289 ZBBXA8MT70 800 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 P4HBP07237 508 aaKnown RBP18.16■□□□□ 0.5
LSM4-206ENST00000600289 QARSP47897 775 aaKnown RBP18.16■□□□□ 0.5
LSM4-206ENST00000600289 WDR5P61964 334 aaKnown RBP18.16■□□□□ 0.5
LSM4-206ENST00000600289 IKBKEQ14164 716 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 TCTN1Q2MV58 587 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 TTC38Q5R3I4 469 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 ZNF710Q8N1W2 664 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 MICALL1Q8N3F8 863 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 NEK9Q8TD19 979 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 SNX21Q969T3 373 aa18.16■□□□□ 0.5
LSM4-206ENST00000600289 INTS4Q96HW7 963 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms