RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TM6SF1Q9BZW5 370 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 FOXQ1Q9C009 403 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 DHX36Q9H2U1 1008 aaKnown RBP4.74□□□□□ -1.65
LIG3-211ENST00000588713 CLSTN2Q9H4D0 955 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 PDGFCQ9NRA1 345 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 RXFP3Q9NSD7 469 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 POLR3EQ9NVU0 708 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 DBR1Q9UK59 544 aaKnown RBP4.74□□□□□ -1.65
LIG3-211ENST00000588713 MTMR6Q9Y217 621 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 MYH2Q9UKX2 1941 aa4.74□□□□□ -1.65
LIG3-211ENST00000588713 CNOT1A5YKK6 2376 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 PTPN13Q12923 2485 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 IGSF10Q6WRI0 2623 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 WNT7AO00755 349 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 GPR37O15354 613 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CCP110O43303 1012 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 ATP8B1O43520 1251 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 LILRB5O75023 590 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 RAB11FIP3O75154 756 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SLU7O95391 586 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 PARNO95453 639 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 ITGB1P05556 798 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 RETP07949 1114 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 LINC00271P0C7V0 271 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 GLULP15104 373 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 H2AFXP16104 143 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 AK2P54819 239 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 GSDMDP57764 484 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 TROAPQ12815 778 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 TPD52L1Q16890 204 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 ABCB5Q2M3G0 1257 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 ZNF528Q3MIS6 628 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 MSS51Q4VC12 460 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 LCE2AQ5TA79 106 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 CES5AQ6NT32 575 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 NFRKBQ6P4R8 1299 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 FBXO38Q6PIJ6 1188 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 RUFY3Q7L099 469 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CCDC186Q7Z3E2 898 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 FOXP4Q8IVH2 680 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 FBXO16Q8IX29 292 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 ZDHHC14Q8IZN3 488 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 TXLNBQ8N3L3 684 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 ZNF513Q8N8E2 541 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 VGLL2Q8N8G2 317 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 C12orf50Q8NA57 414 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 SPC24Q8NBT2 197 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 ZBTB44Q8NCP5 570 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CCDC150Q8NCX0 1101 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SNIP1Q8TAD8 396 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 SPPL3Q8TCT6 385 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SH3RF3Q8TEJ3 882 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 ATP8B4Q8TF62 1192 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SPIRE2Q8WWL2 714 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 KCNB2Q92953 911 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 TOP1MTQ969P6 601 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 BORCS6Q96GS4 357 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 NECTIN4Q96NY8 510 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SCAND2PQ9GZW5 306 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 KATNBL1Q9H079 304 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 LSG1Q9H089 658 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 TNMDQ9H2S6 317 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 L2HGDHQ9H9P8 463 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CBX8Q9HC52 389 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CABP5Q9NP86 173 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CYP26B1Q9NR63 512 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 GNL3LQ9NVN8 582 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 ARGLU1Q9NWB6 273 aaPredicted RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 DLGAP2Q9P1A6 1054 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 CLIP2Q9UDT6 1046 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 FBXO4Q9UKT5 387 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 DENND2AQ9ULE3 1009 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 WASF3Q9UPY6 502 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 SNX14Q9Y5W7 946 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 DMXL2Q8TDJ6 3036 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 ZNFX1Q9P2E3 1918 aaKnown RBP4.73□□□□□ -1.65
LIG3-211ENST00000588713 MYO18BQ8IUG5 2567 aa4.73□□□□□ -1.65
LIG3-211ENST00000588713 TTC41PQ6P2S7 1318 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 PHLPP2Q6ZVD8 1323 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 ADGRA3Q8IWK6 1321 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 SIPA1L1O43166 1804 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 MYH13Q9UKX3 1938 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 DNAJC25-GNG10A0A024R161 153 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 ENO4A6NNW6 628 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TM4SF5O14894 197 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 HYAL3O43820 417 aaPredicted RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 LRP3O75074 770 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 HLA-DOAP06340 250 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 GJB2P29033 226 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 COPB2P35606 906 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 SMCPP49901 116 aaPredicted RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 RIPPLY3P57055 190 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TPM4P67936 248 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 MECOMQ03112 1051 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 DNM1Q05193 864 aaKnown RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 BTG3Q14201 252 aaPredicted RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 BMS1Q14692 1282 aaKnown RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 MBTPS1Q14703 1052 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 SF3A2Q15428 464 aaKnown RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 STX1AQ16623 288 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms