RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PLA2G4BP0C869 781 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 CYP11B2P19099 503 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 PURAQ00577 322 aaKnown RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 PRKCEQ02156 737 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 EHHADHQ08426 723 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 DPYDQ12882 1025 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 KCNB1Q14721 858 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 PLCB4Q15147 1175 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 FSCN1Q16658 493 aaKnown RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 SLC9C1Q4G0N8 1177 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 ARSHQ5FYA8 562 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 RINT1Q6NUQ1 792 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 SESTD1Q86VW0 696 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 DNAJC19Q96DA6 116 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 GSDMAQ96QA5 445 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 KATNAL1Q9BW62 490 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 TRIM9Q9C026 710 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 NUP62CLQ9H1M0 184 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 TUT1Q9H6E5 874 aaKnown RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 XPNPEP3Q9NQH7 507 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 KIAA1468Q9P260 1216 aa10.68□□□□□ -0.7
LIMA1-211ENST00000552338 HOOK1Q9UJC3 728 aaKnown RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 ZNF215Q9UL58 517 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-211ENST00000552338 MYMKA6NI61 221 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 BACH1O14867 736 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 ZBTB39O15060 712 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 KLRC4O43908 158 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 DGAT1O75907 488 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 PTGS1P23219 599 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 ZNF131P52739 623 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 RTP1P59025 263 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 MCM6Q14566 821 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 POSTNQ15063 836 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 LRRC41Q15345 812 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 COBLL1Q53SF7 1204 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 ZNF484Q5JVG2 852 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 RNF180Q86T96 592 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 LINC01465Q8N7H1 131 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 TRIML1Q8N9V2 468 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 ARRDC4Q8NCT1 418 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 NTPCRQ9BSD7 190 aaKnown RBP10.67□□□□□ -0.7
LIMA1-211ENST00000552338 PANK2Q9BZ23 570 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 GTPBP4Q9BZE4 634 aaKnown RBP10.67□□□□□ -0.7
LIMA1-211ENST00000552338 BHMT2Q9H2M3 363 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 RNPEPQ9H4A4 650 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 C17orf75Q9HAS0 396 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 CYP26B1Q9NR63 512 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 ODF2LQ9ULJ1 636 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 CEP350Q5VT06 3117 aa10.67□□□□□ -0.7
LIMA1-211ENST00000552338 NRCAMQ92823 1304 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 MBLAC1A4D2B0 266 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 MYADML2A6NDP7 307 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 RRN3P2A6NIE6 340 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 MAFO75444 373 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 RHOBTB3O94955 611 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 GJB1P08034 283 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 C6orf222P0C671 652 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 MAPTP10636 758 aaKnown RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 CNGA1P29973 690 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 RFC5P40937 340 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 PTPN11Q06124 597 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 GIT2Q14161 759 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 GNASQ5JWF2 1037 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 UNC13DQ70J99 1090 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 SLC43A3Q8NBI5 491 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 RASSF8Q8NHQ8 419 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 PIGOQ8TEQ8 1089 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 SH3TC2Q8TF17 1288 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 DDX12PQ92771 950 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 GLG1Q92896 1179 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 JPH2Q9BR39 696 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 MTG1Q9BT17 334 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-211ENST00000552338 ANP32EQ9BTT0 268 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 FUCA2Q9BTY2 467 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 UNC93B1Q9H1C4 597 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 KCNG1Q9UIX4 513 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 PCDHA5Q9Y5H7 936 aa10.66□□□□□ -0.7
LIMA1-211ENST00000552338 DNM1LO00429 736 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 MAGEB2O15479 319 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 SGPL1O95470 568 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PGK1P00558 417 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 ASGR1P07306 291 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 CCL5P13501 91 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 SCP2P22307 547 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 IRX5P78411 483 aaPredicted RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 SP4Q02446 784 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 POU5F1BQ06416 359 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 MAPK7Q13164 816 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PSMD2Q13200 908 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 CUL4BQ13620 913 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 MTFR1Q15390 333 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 KCNA10Q16322 511 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 CT47A1Q5JQC4 288 aaPredicted RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 UTP14CQ5TAP6 766 aaKnown RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 CAVIN1Q6NZI2 390 aaKnown RBP10.65□□□□□ -0.7
LIMA1-211ENST00000552338 NFRKBQ6P4R8 1299 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 PADI6Q6TGC4 694 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 TRIM50Q86XT4 487 aa10.65□□□□□ -0.7
LIMA1-211ENST00000552338 ZNF710Q8N1W2 664 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms