RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CTNNB1P35222 781 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 GUCY1B3Q02153 619 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 FUT2Q10981 343 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 MTMR3Q13615 1198 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 RBM23Q86U06 439 aaKnown RBP9.45□□□□□ -0.9
CHD4-208ENST00000540960 UBALD2Q8IYN6 164 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 EFHBQ8N7U6 833 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 KRI1Q8N9T8 703 aaKnown RBP9.45□□□□□ -0.9
CHD4-208ENST00000540960 DAGLBQ8NCG7 672 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 AFAP1L1Q8TED9 768 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 DCAF4Q8WV16 495 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 DYNLL2Q96FJ2 89 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 RTKNQ9BST9 563 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 PHF20Q9BVI0 1012 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 SENP2Q9HC62 589 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 C6orf50Q9HD87 102 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 IL17RBQ9NRM6 502 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 NYAP2Q9P242 653 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 CDH22Q9UJ99 828 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 PNMA2Q9UL42 364 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 ZMIZ1Q9ULJ6 1067 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 PPP1R9AQ9ULJ8 1098 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 SORCS3Q9UPU3 1222 aa9.45□□□□□ -0.9
CHD4-208ENST00000540960 ESYT2A0FGR8 921 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 KLRF2D3W0D1 207 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 C5orf67F2Z3F1 127 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 ASGR2P07307 311 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 CHMP4BP1P59074 171 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 ZNF200P98182 395 aaPredicted RBP9.44□□□□□ -0.9
CHD4-208ENST00000540960 PTGISQ16647 500 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 NFRKBQ6P4R8 1299 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 TRAF7Q6Q0C0 670 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 KRT25Q7Z3Z0 450 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 RAB11FIP4Q86YS3 637 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 FBXO16Q8IX29 292 aaPredicted RBP9.44□□□□□ -0.9
CHD4-208ENST00000540960 FSIP1Q8NA03 581 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 VN1R2Q8NFZ6 395 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 MKL1Q969V6 931 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 TRIM44Q96DX7 344 aaPredicted RBP9.44□□□□□ -0.9
CHD4-208ENST00000540960 YME1L1Q96TA2 773 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 SDF4Q9BRK5 362 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 GTPBP4Q9BZE4 634 aaKnown RBP9.44□□□□□ -0.9
CHD4-208ENST00000540960 VCPKMTQ9H867 229 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 ANO10Q9NW15 660 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 DACT1Q9NYF0 836 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 PCDHA4Q9UN74 947 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 Q9Y3F1 56 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 CACNA1IQ9P0X4 2223 aa9.44□□□□□ -0.9
CHD4-208ENST00000540960 IGF2RP11717 2491 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CNTNAP5Q8WYK1 1306 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 IGKV6D-41A0A0C4DH26 115 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 FAM237AA0A1B0GTK4 181 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CCDC194A0A1B0GVG4 234 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 WDR46O15213 610 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 AMHP03971 560 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 PROS1P07225 676 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CKBP12277 381 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 XRCC6P12956 609 aaKnown RBP eCLIP9.43□□□□□ -0.9
CHD4-208ENST00000540960 SDHBP21912 280 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 COPB2P35606 906 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 BMPR1AP36894 532 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 TXLNAP40222 546 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 NRIP1P48552 1158 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 FOSBP53539 338 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 TPM4P67936 248 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 SEMA3FQ13275 785 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 DHX8Q14562 1220 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 HS1BP3Q53T59 392 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 ARL6IP4Q66PJ3 421 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 IQSEC1Q6DN90 963 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 GDF6Q6KF10 455 aaPredicted RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 RBM43Q6ZSC3 357 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 BLIDQ8IZY5 108 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CPXCR1Q8N123 301 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 ANKRD35Q8N283 1001 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 SRBD1Q8N5C6 995 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 DBF4BQ8NFT6 615 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 WNT8BQ93098 351 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CEP95Q96GE4 821 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 MTG1Q9BT17 334 aaPredicted RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 APOL5Q9BWW9 433 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 OSBPL7Q9BZF2 842 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 LMAN2LQ9H0V9 348 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 BARHL2Q9NY43 387 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 ANGPTL2Q9UKU9 493 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 PCDHA7Q9UN72 937 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 NOD1Q9Y239 953 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 TMX2Q9Y320 296 aa9.43□□□□□ -0.9
CHD4-208ENST00000540960 CNOT1A5YKK6 2376 aaKnown RBP9.43□□□□□ -0.9
CHD4-208ENST00000540960 BTBD18B2RXH4 712 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 EFCAB14O75071 495 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 PLEKHA8P1O95397 391 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 TPM3P06753 285 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 SNHG28P0DPA3 235 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 TGM1P22735 817 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 SYKP43405 635 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 MRPL12P52815 198 aaKnown RBP9.42□□□□□ -0.9
CHD4-208ENST00000540960 CEBPZQ03701 1054 aaKnown RBP9.42□□□□□ -0.9
CHD4-208ENST00000540960 RING1Q06587 406 aa9.42□□□□□ -0.9
CHD4-208ENST00000540960 CT47A1Q5JQC4 288 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms