RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 NRXN1Q9ULB1 1477 aa18.95■□□□□ 0.62
PHRF1-205ENST00000533464 IPO5O00410 1097 aaKnown RBP18.95■□□□□ 0.62
PHRF1-205ENST00000533464 SLC16A4O15374 487 aa18.95■□□□□ 0.62
PHRF1-205ENST00000533464 INHBAP08476 426 aa18.95■□□□□ 0.62
PHRF1-205ENST00000533464 SNRNP48Q6IEG0 339 aaKnown RBP18.95■□□□□ 0.62
PHRF1-205ENST00000533464 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
PHRF1-205ENST00000533464 CCSER1Q9C0I3 900 aa18.95■□□□□ 0.62
PHRF1-205ENST00000533464 PSMD6Q15008 389 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 THNSL1Q8IYQ7 743 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 TRIM9Q9C026 710 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 ANO9A1A5B4 782 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 MED7O43513 233 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 KCNB1Q14721 858 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 LMNTD2Q8IXW0 634 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 PLCD3Q8N3E9 789 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 RNF146Q9NTX7 359 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 CD163L1Q9NR16 1453 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 CLEC10AQ8IUN9 316 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 PRPF38AQ8NAV1 312 aaKnown RBP18.94■□□□□ 0.62
PHRF1-205ENST00000533464 FAM193BQ96PV7 902 aaPredicted RBP18.94■□□□□ 0.62
PHRF1-205ENST00000533464 DIP2AQ14689 1571 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 RWDD2BP57060 319 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 KRT76Q01546 638 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 FMR1Q06787 632 aaKnown RBP eCLIP18.94■□□□□ 0.625e-9■■■■■ 37.3
PHRF1-205ENST00000533464 EMBQ6PCB8 327 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 AP5M1Q9H0R1 490 aa18.94■□□□□ 0.62
PHRF1-205ENST00000533464 REREQ9P2R6 1566 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 EIF3CLB5ME19 914 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 P4HBP07237 508 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 TSNAXIP1Q2TAA8 658 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 NAALADL2Q58DX5 795 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 ANKRD40Q6AI12 368 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 EIF3CQ99613 913 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 SNX25Q9H3E2 840 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 QARSP47897 775 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 ITKQ08881 620 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 IFT88Q13099 833 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 MTF1Q14872 753 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 STXBP2Q15833 593 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 OR6B2Q6IFH4 312 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 NEK9Q8TD19 979 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 NSUN6Q8TEA1 469 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 HPS3Q969F9 1004 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 HOXC10Q9NYD6 342 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 MCF2LO15068 1137 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 RPF1Q9H9Y2 349 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 SPATA31A1Q5TZJ5 1347 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 ADGRB1O14514 1584 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 CCDC188H7C350 402 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 CTNND1O60716 968 aaKnown RBP18.93■□□□□ 0.62
PHRF1-205ENST00000533464 SAT1P21673 171 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 IL9RQ01113 521 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 SEMA3FQ13275 785 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 SURF1Q15526 300 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 ALS2CLQ60I27 953 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 CDKL2Q92772 493 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 ATP6V0A4Q9HBG4 840 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 IFT122Q9HBG6 1241 aa18.93■□□□□ 0.62
PHRF1-205ENST00000533464 A0A1W2PQC6 194 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 CRAMP1Q96RY5 1269 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 ZNF543Q08ER8 600 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 SLMAPQ14BN4 828 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 ZNF394Q53GI3 561 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 FBXO33Q7Z6M2 555 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 EXOC4Q96A65 974 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 EIF2AK1Q9BQI3 630 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 HERC5Q9UII4 1024 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 MKRN3Q13064 507 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 PDIA5Q14554 519 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 LXNQ9BS40 222 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 NOVA2Q9UNW9 492 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 AFG3L2Q9Y4W6 797 aa18.92■□□□□ 0.62
PHRF1-205ENST00000533464 LDHAP00338 332 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 BASP1P80723 227 aaKnown RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 ZKSCAN8Q15776 578 aaPredicted RBP18.92■□□□□ 0.62
PHRF1-205ENST00000533464 DENND3A2RUS2 1198 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 CLDN3O15551 220 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 SUN1O94901 812 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 PDE1BQ01064 536 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 TACO1Q9BSH4 297 aaKnown RBP18.91■□□□□ 0.62
PHRF1-205ENST00000533464 ZC3H13Q5T200 1668 aaKnown RBP18.91■□□□□ 0.62
PHRF1-205ENST00000533464 SH3BP5O60239 455 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 KCTD6Q8NC69 237 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 CCNYQ8ND76 341 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 HEXIM2Q96MH2 286 aaKnown RBP18.91■□□□□ 0.62
PHRF1-205ENST00000533464 SEL1LQ9UBV2 794 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 TBK1Q9UHD2 729 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 HPS5Q9UPZ3 1129 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 MYO1EQ12965 1108 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 CNOT8Q9UFF9 292 aaKnown RBP18.91■□□□□ 0.62
PHRF1-205ENST00000533464 CUL1Q13616 776 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 CCDC197Q8NCU1 140 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 FAM213AQ9BRX8 229 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 KCNF1Q9H3M0 494 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 ADAM22Q9P0K1 906 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 HDAC6Q9UBN7 1215 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 TUBE1Q9UJT0 475 aa18.91■□□□□ 0.62
PHRF1-205ENST00000533464 KIF22Q14807 665 aa18.9■□□□□ 0.62
PHRF1-205ENST00000533464 RSRC2Q7L4I2 434 aaKnown RBP18.9■□□□□ 0.62
PHRF1-205ENST00000533464 RSPH3Q86UC2 560 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms