RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 MFSD3Q96ES6 412 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 DYNLL2Q96FJ2 89 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 BTBD6Q96KE9 485 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 ALDH8A1Q9H2A2 487 aaPredicted RBP4.82□□□□□ -1.64
CD44-226ENST00000527889 NCOA5Q9HCD5 579 aaKnown RBP4.82□□□□□ -1.64
CD44-226ENST00000527889 SH2B1Q9NRF2 756 aaPredicted RBP4.82□□□□□ -1.64
CD44-226ENST00000527889 HOMER2Q9NSB8 354 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 ATP8A2Q9NTI2 1148 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 MCM9Q9NXL9 1143 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 TRIM33Q9UPN9 1127 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 SMC3Q9UQE7 1217 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 ATP8A1Q9Y2Q0 1164 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 CORINQ9Y5Q5 1042 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 SLC12A7Q9Y666 1083 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 KAT6AQ92794 2004 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 UNC80Q8N2C7 3258 aa4.82□□□□□ -1.64
CD44-226ENST00000527889 SPTBN5Q9NRC6 3674 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 FLT1P17948 1338 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 CNTNAP5Q8WYK1 1306 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 A0A087X0B3 334 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 KLF18A0A0U1RQI7 1052 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 GOLGA8BA8MQT2 603 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PSMD14O00487 310 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 SOX1O00570 391 aaPredicted RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 SH2B2O14492 632 aaPredicted RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 IFIT3O14879 490 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 SUSD5O60279 629 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 RANBP6O60518 1105 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 JAK2O60674 1132 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PFKFB2O60825 505 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 DNAJA2O60884 412 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 NME1P15531 152 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 RXRAP19793 462 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 CALRP27797 417 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 GJB2P29033 226 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 STAT3P40763 770 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 IARSP41252 1262 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 RBM5P52756 815 aaKnown RBP eCLIP4.81□□□□□ -1.64
CD44-226ENST00000527889 SCRN1Q12765 414 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 RAB3GAP1Q15042 981 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 WIPI1Q5MNZ9 446 aaPredicted RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 ODR4Q5SWX8 454 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 STRIP1Q5VSL9 837 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 CDC42EP5Q6NZY7 148 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 LRFN4Q6PJG9 635 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 VHLLQ6RSH7 139 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PODNQ7Z5L7 613 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 APBB1IPQ7Z5R6 666 aaPredicted RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 FAM35AQ86V20 835 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 FMNL3Q8IVF7 1028 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 NIM1KQ8IY84 436 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 MICALL1Q8N3F8 863 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 SLC44A5Q8NCS7 719 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 NEDD1Q8NHV4 660 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 GPBAR1Q8TDU6 330 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 TNPO1Q92973 898 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 GTF3C6Q969F1 213 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 TEKT1Q969V4 418 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 DDX11Q96FC9 970 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 INTS4Q96HW7 963 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 CHAMP1Q96JM3 812 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 MYL10Q9BUA6 226 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 AGXT2Q9BYV1 514 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 KRT23Q9C075 422 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 LACRTQ9GZZ8 138 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 UBA5Q9GZZ9 404 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 SMG9Q9H0W8 520 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 CNNM2Q9H8M5 875 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 LY9Q9HBG7 655 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 DDX4Q9NQI0 724 aaKnown RBP4.81□□□□□ -1.64
CD44-226ENST00000527889 USP40Q9NVE5 1235 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 GMIPQ9P107 970 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 ZSWIM5Q9P217 1185 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 REV1Q9UBZ9 1251 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 ANAPC4Q9UJX5 808 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 NAGPAQ9UK23 515 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PCDHA4Q9UN74 947 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 SLC6A14Q9UN76 642 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.81□□□□□ -1.64
CD44-226ENST00000527889 ZDHHC9Q9Y397 364 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 STARD13Q9Y3M8 1113 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PLXNA1Q9UIW2 1896 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 PAPPA2Q9BXP8 1791 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 VCANP13611 3396 aa4.81□□□□□ -1.64
CD44-226ENST00000527889 ROBO3Q96MS0 1386 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 LCTP09848 1927 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 LOXHD1Q8IVV2 1947 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 WDR19Q8NEZ3 1342 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 ELOA3CA0A087WX78 387 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 CCDC194A0A1B0GVG4 234 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 SHTN1A0MZ66 631 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 SLC22A31A6NKX4 558 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 ELOA3DA6NLF2 546 aaPredicted RBP4.8□□□□□ -1.64
CD44-226ENST00000527889 ADARB2-AS1A8MUL3 147 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 TNFRSF10CO14798 259 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 ORC4O43929 436 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 NMT2O60551 498 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 RFPL3O75679 317 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 CTDNEP1O95476 244 aa4.8□□□□□ -1.64
CD44-226ENST00000527889 MYCLP1P12525 358 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms