RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 TCF3P15923 654 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SREBF1P36956 1147 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CTDSPL2Q05D32 466 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 RTN1Q16799 776 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CTC1Q2NKJ3 1217 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 KIAA1755Q5JYT7 1200 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 FAM83BQ5T0W9 1011 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 PPP4R3AQ6IN85 833 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 C16orf59Q7L2K0 433 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 KRT25Q7Z3Z0 450 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 AFAP1L1Q8TED9 768 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SREK1Q8WXA9 508 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 INPP4AQ96PE3 977 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 BACH2Q9BYV9 841 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 FAM217BQ9NTX9 383 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 HSPBP1Q9NZL4 362 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 KCNG1Q9UIX4 513 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 PAXBP1Q9Y5B6 917 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 UBIAD1Q9Y5Z9 338 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CEP250Q9BV73 2442 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 MYH15Q9Y2K3 1946 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 IGKV6D-21A0A0A0MT36 114 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TEX51A0A1B0GUA7 166 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 GRXCR1A8MXD5 290 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 KLRF2D3W0D1 207 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TNPO2O14787 897 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 RANBP6O60518 1105 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 FLOT1O75955 427 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CCND2P30279 289 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LSM11P83369 360 aaKnown RBP eCLIP3.24□□□□□ -1.89
MCF2-208ENST00000519895 POU5F1Q01860 360 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 TAP1Q03518 808 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 POU5F1BQ06416 359 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TOB2Q14106 344 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 RAB3GAP1Q15042 981 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CDC37Q16543 378 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 PTPROQ16827 1216 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TRIM60Q495X7 471 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 FAM26DQ5JW98 314 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LAIR1Q6GTX8 287 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 NLRX1Q86UT6 975 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ADGRF4Q8IZF3 695 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SMCR8Q8TEV9 937 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 CUL5Q93034 780 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SAMD11Q96NU1 681 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 RIT2Q99578 217 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TINF2Q9BSI4 451 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 KATNAL1Q9BW62 490 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SGPP1Q9BX95 441 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SMOC2Q9H3U7 446 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LIMD1Q9UGP4 676 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 DDX20Q9UHI6 824 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 BRPF3Q9ULD4 1205 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 USP18Q9UMW8 372 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LIMCH1Q9UPQ0 1083 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 PATJQ8NI35 1801 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SHROOM3Q8TF72 1996 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TRIM75PA6NK02 468 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SPATA31C2B4DYI2 1134 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 B4E1Z4 1266 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TMEM232C9JQI7 657 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 GCOM1H8Y6P7 765 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 HAS3O00219 553 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 GAS2O43903 313 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 POLR2MP0CAP2 368 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 HOXB4P17483 251 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 NCLP19338 710 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 PDIA3P30101 505 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 PRPHP41219 470 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ALDH5A1P51649 535 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 FOXK1P85037 733 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LAMC2Q13753 1193 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 UBAP2LQ14157 1087 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 NEDD9Q14511 834 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 DUSP28Q4G0W2 176 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 NFRKBQ6P4R8 1299 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CCDC62Q6P9F0 684 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 B3GNT9Q6UX72 402 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 VSIG10LQ86VR7 867 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TRIM22Q8IYM9 498 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LRRC47Q8N1G4 583 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 SLC44A5Q8NCS7 719 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SCFD2Q8WU76 684 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 DDX12PQ92771 950 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 GTF3C6Q969F1 213 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ATG4CQ96DT6 458 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TRERF1Q96PN7 1200 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TSPAN18Q96SJ8 248 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 TIPINQ9BVW5 301 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 PPP1R12CQ9BZL4 782 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 IL25Q9H293 177 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 FOXP1Q9H334 677 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 C6orf50Q9HD87 102 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ANO2Q9NQ90 1003 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 RNF146Q9NTX7 359 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 PDRG1Q9NUG6 133 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SEC63Q9UGP8 760 aaKnown RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 CPA4Q9UI42 421 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 CTDP1Q9Y5B0 961 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 A0A087WV48 116 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms