RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CCDC18Q5T9S5 1454 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 TROQ12816 1431 aaPredicted RBP5.33□□□□□ -1.56
NUP54-212ENST00000513248 ACOT7O00154 380 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 CBX4O00257 560 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 GSTA4O15217 222 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 AKAP8O43823 692 aaKnown RBP5.33□□□□□ -1.56
NUP54-212ENST00000513248 TUSC3Q13454 348 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 SEC23AQ15436 765 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 TEPPQ6URK8 271 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 ARHGAP36Q6ZRI8 547 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 ZNF662Q6ZS27 426 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 TTLL7Q6ZT98 887 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 KCTD1Q719H9 257 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 RNF180Q86T96 592 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 DLG3Q92796 817 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 SAMD11Q96NU1 681 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 SAMD15Q9P1V8 674 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 DSEQ9UL01 958 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 NUB1Q9Y5A7 615 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 KIF14Q15058 1648 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 CFAP74Q9C0B2 1584 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 ARHGAP5Q13017 1502 aa5.33□□□□□ -1.56
NUP54-212ENST00000513248 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.33□□□□□ -1.56
NUP54-212ENST00000513248 PLCH2O75038 1416 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 CASKIN1Q8WXD9 1431 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 SCAPERQ9BY12 1400 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 MTUS2Q5JR59 1369 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 FAM90A27PA6NNH2 459 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 MATN3O15232 486 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 OPA1O60313 960 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 CLASP2O75122 1294 aaKnown RBP5.32□□□□□ -1.56
NUP54-212ENST00000513248 LTFP02788 710 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 POU3F3P20264 500 aaPredicted RBP5.32□□□□□ -1.56
NUP54-212ENST00000513248 GRIN1Q05586 938 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 PCBP1Q15365 356 aaKnown RBP eCLIP5.32□□□□□ -1.56
NUP54-212ENST00000513248 CRY1Q16526 586 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 FAM47CQ5HY64 1035 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 FIGNQ5HY92 759 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 CPZQ66K79 652 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 STK32CQ86UX6 486 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 RBM12BQ8IXT5 1001 aaKnown RBP5.32□□□□□ -1.56
NUP54-212ENST00000513248 TTLL6Q8N841 843 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 KRTAP3-1Q9BYR8 98 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 TMX1Q9H3N1 280 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 B4GALT6Q9UBX8 382 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 MAPRE3Q9UPY8 281 aa5.32□□□□□ -1.56
NUP54-212ENST00000513248 POGZQ7Z3K3 1410 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 PCF11O94913 1555 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 DVL2O14641 736 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 C4BPAP04003 597 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 JMJD7P0C870 316 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 SARSP49591 514 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 DSG1Q02413 1049 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 ADAM9Q13443 819 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 SEPT7Q16181 437 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 KRT26Q7Z3Y9 468 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 DDX53Q86TM3 631 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 ZNF761Q86XN6 746 aaPredicted RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 PTRH1Q86Y79 214 aaKnown RBP5.31□□□□□ -1.56
NUP54-212ENST00000513248 NLGN4XQ8N0W4 816 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 CD244Q9BZW8 370 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 CATSPERZQ9NTU4 200 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 PRKAB1Q9Y478 270 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 B3GALT1Q9Y5Z6 326 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 FYCO1Q9BQS8 1478 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 CEP162Q5TB80 1403 aa5.31□□□□□ -1.56
NUP54-212ENST00000513248 CCNB3Q8WWL7 1395 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 TTC37Q6PGP7 1564 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 M0R2C6 588 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 F2P00734 622 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 FAHP16930 419 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 RPL13P26373 211 aaKnown RBP5.3□□□□□ -1.56
NUP54-212ENST00000513248 STAT3P40763 770 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 DNM2P50570 870 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 PAN2Q504Q3 1202 aaKnown RBP5.3□□□□□ -1.56
NUP54-212ENST00000513248 TMC5Q6UXY8 1006 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 PPM1KQ8N3J5 372 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 AFAP1Q8N556 730 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 CHST14Q8NCH0 376 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 ZSWIM3Q96MP5 696 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 TMEM209Q96SK2 561 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 CFDP1Q9UEE9 299 aaPredicted RBP5.3□□□□□ -1.56
NUP54-212ENST00000513248 SRRDQ9UH36 339 aa5.3□□□□□ -1.56
NUP54-212ENST00000513248 ZFYVE16Q7Z3T8 1539 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 SUV39H1O43463 412 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 PDE8AO60658 829 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 PLATP00750 562 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 APPP05067 770 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 MYCLP1P12525 358 aaPredicted RBP5.29□□□□□ -1.56
NUP54-212ENST00000513248 PTPN1P18031 435 aaKnown RBP5.29□□□□□ -1.56
NUP54-212ENST00000513248 GJA4P35212 333 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 ST5P78524 1137 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 ARHGAP44Q17R89 818 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 CFAP100Q494V2 611 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 PRR31Q5SQ13 230 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 PIK3R6Q5UE93 754 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 PKN3Q6P5Z2 889 aa5.29□□□□□ -1.56
NUP54-212ENST00000513248 UBE2R2Q712K3 238 aaPredicted RBP5.29□□□□□ -1.56
NUP54-212ENST00000513248 CISD2Q8N5K1 135 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms