RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GIPC2Q8TF65 315 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 BRD8Q9H0E9 1235 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 PDP2Q9P2J9 529 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 MYO3AQ8NEV4 1616 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 KIF28PB7ZC32 967 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CUL4AQ13619 759 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 KLHL31Q9H511 634 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 TRIM39Q9HCM9 518 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 BABAM1Q9NWV8 329 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 ADGRB2O60241 1585 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 GLI2P10070 1586 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 USP17L12C9JPN9 530 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 USP17L21D6R901 530 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 BBOX1O75936 387 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CCND1P24385 295 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 HNRNPH1P31943 449 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 GARSP41250 739 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 YWHAGP61981 247 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 SCYL2Q6P3W7 929 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 LPIN2Q92539 896 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 CDKL2Q92772 493 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 LRRC37BQ96QE4 947 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 MROH1Q8NDA8 1641 aa9.35□□□□□ -0.91
LIMCH1-218ENST00000513024 WDR91A4D1P6 747 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 GSTA4O15217 222 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 RASSF9O75901 435 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MOCS3O95396 460 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 GNAT1P11488 350 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 BFSP1Q12934 665 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MUM1L1Q5H9M0 696 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 FAM26FQ5R3K3 315 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 NLRP14Q86W24 1093 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MAPKAPK5Q8IW41 473 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 GJA10Q969M2 543 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 TRPV6Q9H1D0 765 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PPARAQ07869 468 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 BZW1Q7L1Q6 419 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 LUZP2Q86TE4 346 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 CPXCR1Q8N123 301 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 DCLK2Q8N568 766 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC17A8Q8NDX2 589 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 FBXL13Q8NEE6 735 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 SPDYE1Q8NFV5 336 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 GDAP1Q8TB36 358 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 DNAJC9Q8WXX5 260 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 GPKOWQ92917 476 aaPredicted RBP eCLIP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MAP4K1Q92918 833 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 CCDC127Q96BQ5 260 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PPP1R14BQ96C90 147 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 EPC1Q9H2F5 836 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 RGL1Q9NZL6 768 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PCDHA12Q9UN75 941 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 KIF24Q5T7B8 1368 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 CYP2E1P05181 493 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 NCF2P19878 526 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 C4BPBP20851 252 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 TBL3Q12788 808 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 EXOC3L4Q17RC7 722 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 Q4G0T1 1027 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 BTNL9Q6UXG8 535 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 VSTM4Q8IW00 320 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 ECT2Q9H8V3 914 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MRPL40Q9NQ50 206 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PANK4Q9NVE7 773 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 DNAJC17Q9NVM6 304 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 ZMYM6O95789 1325 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MED14O60244 1454 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 TLR3O15455 904 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 FAM200BP0CF97 657 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 ADRA2BP18089 450 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PDE1BQ01064 536 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 ADCY2Q08462 1091 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 CYTH1Q15438 398 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 RABGAP1LQ5R372 815 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 MCRS1Q96EZ8 462 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 RCOR1Q9UKL0 485 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 HECW2Q9P2P5 1572 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 TNKSO95271 1327 aa9.34□□□□□ -0.91
LIMCH1-218ENST00000513024 PGRMC1O00264 195 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 DDHD2O94830 711 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 HAUS5O94927 633 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 HOXB7P09629 217 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 OR52Z1P0C646 297 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CA4P22748 312 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 YY1P25490 414 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CCDC103Q8IW40 242 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 MPP4Q96JB8 637 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM161BQ96MY7 647 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 MTA3Q9BTC8 594 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 MBD2Q9UBB5 411 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 PPARGC1AQ9UBK2 798 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 ZFP69BQ9UJL9 534 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 NFU1Q9UMS0 254 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 SMAPO00193 183 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 NVLO15381 856 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 SCP2P22307 547 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 RPS8P62241 208 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 MAP3K10Q02779 954 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 NDUFA5Q16718 116 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms