RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RIT2Q99578 217 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 FOXP1Q9H334 677 aaPredicted RBP9.04□□□□□ -0.96
USP40-216ENST00000485943 DISC1Q9NRI5 854 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 GABBR1Q9UBS5 961 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 GTF2IRD1Q9UHL9 959 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 TUBE1Q9UJT0 475 aa9.04□□□□□ -0.96
USP40-216ENST00000485943 KIAA0355O15063 1070 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 HBP1O60381 514 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 FGBP02675 491 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 PFKMP08237 780 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 CIITAP33076 1130 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 CYP2C18P33260 490 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 RFC2P35250 354 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 TXKP42681 527 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 DNM2P50570 870 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 SEMA3FQ13275 785 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 PTK7Q13308 1070 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 GRIK4Q16099 956 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 Q4G0T1 1027 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 TTC38Q5R3I4 469 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 ODR4Q5SWX8 454 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 PPP4R3AQ6IN85 833 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 GDF6Q6KF10 455 aaPredicted RBP9.03□□□□□ -0.96
USP40-216ENST00000485943 MFSD5Q6N075 450 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 TAF2Q6P1X5 1199 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 OTUD6AQ7L8S5 288 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 SH3RF1Q7Z6J0 888 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 NOSTRINQ8IVI9 506 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 TDHQ8IZJ6 230 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 METTL13Q8N6R0 699 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 FBXO18Q8NFZ0 1043 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 RDM1Q8NG50 284 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 AFAP1L1Q8TED9 768 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 CDK5RAP3Q96JB5 506 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 KIF2CQ99661 725 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 JPH2Q9BR39 696 aaPredicted RBP9.03□□□□□ -0.96
USP40-216ENST00000485943 GJB4Q9NTQ9 266 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 SETD4Q9NVD3 440 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 PCDHA12Q9UN75 941 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 GINS2Q9Y248 185 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 EMSYQ7Z589 1322 aa9.03□□□□□ -0.96
USP40-216ENST00000485943 TRIP12Q14669 1992 aaPredicted RBP9.03□□□□□ -0.96
USP40-216ENST00000485943 KIF28PB7ZC32 967 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 TBX3O15119 743 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 CTAGE5O15320 804 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 MSH4O15457 936 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 AP1G2O75843 785 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 CTSHP09668 335 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 FDPSP14324 419 aaKnown RBP9.02□□□□□ -0.97
USP40-216ENST00000485943 TRAPPC10P48553 1259 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 CDK7P50613 346 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 TBC1D8BQ0IIM8 1120 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 ZNF484Q5JVG2 852 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 IER5Q5VY09 327 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 HAUS3Q68CZ6 603 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 LRRC8DQ7L1W4 858 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 PLPPR4Q7Z2D5 763 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 EXOC8Q8IYI6 725 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 FAM49AQ9H0Q0 323 aaPredicted RBP9.02□□□□□ -0.97
USP40-216ENST00000485943 AKT3Q9Y243 479 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 BRCA2P51587 3418 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 SCN10AQ9Y5Y9 1956 aa9.02□□□□□ -0.97
USP40-216ENST00000485943 A0A1W2PPC1 479 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 GSTTP1A0A1W2PQM5 241 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 TRIM43BA6NCK2 446 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 RSPH10B2B2RC85 870 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 OR52Z1P0C646 297 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 RSPH10BP0C881 870 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 PDIA4P13667 645 aaKnown RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 CSF2RAP15509 400 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 SELPP16109 830 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 IBSPP21815 317 aaPredicted RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 PSMC5P62195 406 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 ITGB3BPQ13352 177 aaPredicted RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 ORC2Q13416 577 aaPredicted RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 ZRSR1Q15695 479 aaKnown RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 ZNF174Q15697 407 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 MTERF2Q49AM1 385 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 RILPL1Q5EBL4 403 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 SESTD1Q86VW0 696 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 TPH2Q8IWU9 490 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 SLC7A3Q8WY07 619 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 TRIM43Q96BQ3 446 aaPredicted RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 SCLYQ96I15 445 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 C16orf70Q9BSU1 422 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 UNC45AQ9H3U1 944 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 RNPEPQ9H4A4 650 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 TTC12Q9H892 705 aaPredicted RBP9.01□□□□□ -0.97
USP40-216ENST00000485943 SUGCTQ9HAC7 445 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 IL23AQ9NPF7 189 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 MSRAQ9UJ68 235 aa9.01□□□□□ -0.97
USP40-216ENST00000485943 IGLV3-22A0A075B6J6 115 aa9□□□□□ -0.97
USP40-216ENST00000485943 CYP3A7-CYP3A51PA0A087WV96 503 aa9□□□□□ -0.97
USP40-216ENST00000485943 POTEMA6NI47 508 aa9□□□□□ -0.97
USP40-216ENST00000485943 MAGEB2O15479 319 aa9□□□□□ -0.97
USP40-216ENST00000485943 TREHO43280 583 aa9□□□□□ -0.97
USP40-216ENST00000485943 SLC37A4O43826 429 aa9□□□□□ -0.97
USP40-216ENST00000485943 EFCAB14O75071 495 aa9□□□□□ -0.97
USP40-216ENST00000485943 RNF40O75150 1001 aa9□□□□□ -0.97
USP40-216ENST00000485943 CAND2O75155 1236 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms