RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 ALDH8A1Q9H2A2 487 aaPredicted RBP7.1□□□□□ -1.27
PTCD3-215ENST00000484203 HIPK3Q9H422 1215 aa7.1□□□□□ -1.27
PTCD3-215ENST00000484203 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.1□□□□□ -1.27
PTCD3-215ENST00000484203 PXMP2Q9NR77 195 aa7.1□□□□□ -1.27
PTCD3-215ENST00000484203 STXBP5LQ9Y2K9 1186 aa7.1□□□□□ -1.27
PTCD3-215ENST00000484203 SLC12A7Q9Y666 1083 aa7.1□□□□□ -1.27
PTCD3-215ENST00000484203 CUL9Q8IWT3 2517 aa7.1□□□□□ -1.27
PTCD3-215ENST00000484203 CCDC196A0A1B0GTZ2 297 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 hCG_1984214I3L0E3 225 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SOX1O00570 391 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SLC27A2O14975 620 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 REC8O95072 547 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 MYL3P08590 195 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 ACTN1P12814 892 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 CCND2P30279 289 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 NECTIN1Q15223 517 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 OCLNQ16625 522 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 ERICH6BQ5W0A0 696 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 CREB3L3Q68CJ9 461 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 FIGNL1Q6PIW4 674 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SEPT14Q6ZU15 432 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 VSIG10LQ86VR7 867 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SESTD1Q86VW0 696 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SGMS1Q86VZ5 419 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 HOMER1Q86YM7 354 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 DHX37Q8IY37 1157 aaKnown RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 ZNF654Q8IZM8 581 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 ZNF713Q8N859 430 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 GIMAP8Q8ND71 665 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 PPTC7Q8NI37 304 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 CAGE1Q8TC20 777 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 TAAR1Q96RJ0 339 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 PDCD2LQ9BRP1 358 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 COL25A1Q9BXS0 654 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 ZCCHC2Q9C0B9 1178 aaKnown RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 EHMT1Q9H9B1 1298 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 LY9Q9HBG7 655 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 IL23AQ9NPF7 189 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 RBM28Q9NW13 759 aaKnown RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 CXXC1Q9P0U4 656 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-215ENST00000484203 MRVI1Q9Y6F6 885 aa7.09□□□□□ -1.27
PTCD3-215ENST00000484203 SZT2Q5T011 3432 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 SH2B2O14492 632 aaPredicted RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 MAFGO15525 162 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 B4GALT4O60513 344 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 FGBP02675 491 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 EIF2AK2P19525 551 aaKnown RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 FGD1P98174 961 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 NEDD9Q14511 834 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 RAB30Q15771 203 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 MCTP2Q6DN12 878 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 LRRC69Q6ZNQ3 347 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 DHX32Q7L7V1 743 aaKnown RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 NLRX1Q86UT6 975 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 C7orf31Q8N865 590 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 FANCBQ8NB91 859 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 SMARCC2Q8TAQ2 1214 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 HERVK_113Q902F9 699 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 TNPO1Q92973 898 aaKnown RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 NEK1Q96PY6 1258 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 PIGSQ96S52 555 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 MKNK1Q9BUB5 465 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 NOC4LQ9BVI4 516 aaKnown RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 CPVLQ9H3G5 476 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 MLXIPQ9HAP2 919 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 MTMR10Q9NXD2 777 aa7.08□□□□□ -1.28
PTCD3-215ENST00000484203 DDX41Q9UJV9 622 aaKnown RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 GPC6Q9Y625 555 aaPredicted RBP7.08□□□□□ -1.28
PTCD3-215ENST00000484203 SPDYE3A6NKU9 549 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 NOP56O00567 594 aaKnown RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 ATXN7O15265 892 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 FIBPO43427 364 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 CYTH3O43739 400 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 PPP1R11O60927 126 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 EFCAB14O75071 495 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 FOSP01100 380 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 RPLP2P05387 115 aaKnown RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 MMP3P08254 477 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 GNAT1P11488 350 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 MYCLP12524 364 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 HOXD8P13378 290 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 CSF2RAP15509 400 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 ITGB8P26012 769 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 PSMA5P28066 241 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 ICAM3P32942 547 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 ANTXR2P58335 489 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 ARHGAP1Q07960 439 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 UBAP2LQ14157 1087 aaKnown RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 PGM5Q15124 567 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 FAM47CQ5HY64 1035 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 TMEM240Q5SV17 173 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 C9orf50Q5SZB4 431 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 CELF3Q5SZQ8 465 aaKnown RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 PCNX4Q63HM2 1172 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 FAM43BQ6ZT52 329 aaPredicted RBP7.07□□□□□ -1.28
PTCD3-215ENST00000484203 CHST3Q7LGC8 479 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 FCHSD1Q86WN1 690 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 AFG1LQ8WV93 481 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 TBC1D5Q92609 795 aa7.07□□□□□ -1.28
PTCD3-215ENST00000484203 SPATA33Q96N06 139 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms