RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ADGRF4Q8IZF3 695 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 COA7Q96BR5 231 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 KRT12Q99456 494 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 NUF2Q9BZD4 464 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 SYNCQ9H7C4 482 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ZNF70Q9UC06 446 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 MAN1B1Q9UKM7 699 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 HPSEQ9Y251 543 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 COL24A1Q17RW2 1714 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TULP2O00295 520 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PSMD14O00487 310 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ZBED4O75132 1171 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PPP1R37O75864 691 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 RFC1P35251 1148 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 POTEAQ6S8J7 498 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TOGARAM2Q6ZUX3 1019 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TBC1D1Q86TI0 1168 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC13Q8IYE1 715 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 CERS5Q8N5B7 392 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PAGE5Q96GU1 130 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 FGD4Q96M96 766 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PSMB7Q99436 277 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TRIM31Q9BZY9 425 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PRKAG2Q9UGJ0 569 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 ASIC3Q9UHC3 531 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TUBE1Q9UJT0 475 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 PCDHA12Q9UN75 941 aa6.71□□□□□ -1.34
VPS13D-202ENST00000460333 BZW2Q9Y6E2 419 aaKnown RBP6.71□□□□□ -1.34
VPS13D-202ENST00000460333 TIAM2Q8IVF5 1701 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 TMEM110-MUSTN1A8MSY1 372 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 F5H6K3 240 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 TRAF5O00463 557 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 DCTN3O75935 186 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 POLR2MP0CAP2 368 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 MAN1A1P33908 653 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SMTNP53814 917 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 MRPS35P82673 323 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 KLRC3Q07444 240 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 STRN3Q13033 797 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FAM133BQ5BKY9 247 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FKBP1CQ5VVH2 108 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 MCF2L2Q86YR7 1114 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ACRBPQ8NEB7 543 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 RIOX1Q9H6W3 641 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 RWDD2AQ9UIY3 292 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FAM237AA0A1B0GTK4 181 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 GRID2IPA4D2P6 1211 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SLC26A4O43511 780 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SPOPO43791 374 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 RPN1P04843 607 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CCND1P24385 295 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SLC16A2P36021 539 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 TECP42680 631 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 TOB1P50616 345 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 RNASE9P60153 205 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 PPP2R2AP63151 447 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ZBED6P86452 979 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 DEUP1Q05D60 604 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 IQCB1Q15051 598 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 NBPF20Q3BBV1 942 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 USH1GQ495M9 461 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 LRIG3Q6UXM1 1119 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SYCP3Q8IZU3 236 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 LRRC8CQ8TDW0 803 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ZNF473Q8WTR7 871 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 STAMBPL1Q96FJ0 436 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 EPSTI1Q96J88 318 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC68Q9H2F9 335 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 DISC1Q9NRI5 854 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FGFR1OP2Q9NVK5 253 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ADGRG1Q9Y653 693 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC188H7C350 402 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 PGRMC1O00264 195 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ENC1O14682 589 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CALUO43852 315 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SNUPNO95149 360 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 KRT15P19012 456 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ECE1P42892 770 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 IREB2P48200 963 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FUT2Q10981 343 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 LRRC31Q6UY01 552 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC105Q8IYK2 499 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 ANKRD35Q8N283 1001 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 PAF1Q8N7H5 531 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 CFAP61Q8NHU2 1237 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 MGARPQ8TDB4 240 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SLC10A4Q96EP9 437 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 OSBPL1AQ9BXW6 950 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 FUT8Q9BYC5 575 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 NOVA2Q9UNW9 492 aaKnown RBP6.7□□□□□ -1.34
VPS13D-202ENST00000460333 IRS2Q9Y4H2 1338 aa6.7□□□□□ -1.34
VPS13D-202ENST00000460333 SPDYE2BA6NHP3 402 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 SPDYE6P0CI01 402 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 SHMT1P34896 483 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 HS2ST1Q7LGA3 356 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 SDCCAG8Q86SQ7 713 aaPredicted RBP6.69□□□□□ -1.34
VPS13D-202ENST00000460333 NEK9Q8TD19 979 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 CCSER1Q9C0I3 900 aa6.69□□□□□ -1.34
VPS13D-202ENST00000460333 KCND1Q9NSA2 647 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms