RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ATG16L1Q676U5 607 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 MASTLQ96GX5 879 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 FSD1LQ9BXM9 530 aa16.53■□□□□ 0.24
PTPRF-206ENST00000429895 CRKP46108 304 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 DCAF4L1Q3SXM0 396 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 CCHCR1Q8TD31 782 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 DHX38Q92620 1227 aaKnown RBP16.52■□□□□ 0.24
PTPRF-206ENST00000429895 EFHD1Q9BUP0 239 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 ATP6V0A4Q9HBG4 840 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 NOVA2Q9UNW9 492 aaKnown RBP16.52■□□□□ 0.24
PTPRF-206ENST00000429895 KCNA1Q09470 495 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 SMAD1Q15797 465 aaKnown RBP16.52■□□□□ 0.24
PTPRF-206ENST00000429895 WRNIP1Q96S55 665 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 ABCC2Q92887 1545 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 E2F5Q15329 346 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 COA1Q9GZY4 146 aa16.52■□□□□ 0.24
PTPRF-206ENST00000429895 SNX2O60749 519 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 HSPA4LO95757 839 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 MXD4Q14582 209 aaPredicted RBP16.52■□□□□ 0.23
PTPRF-206ENST00000429895 STXBP2Q15833 593 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 ACCSLQ4AC99 568 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 ACBD5Q5T8D3 534 aaPredicted RBP16.52■□□□□ 0.23
PTPRF-206ENST00000429895 PIDD1Q9HB75 910 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 PIM2Q9P1W9 311 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 H3BRJ5 948 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 PAMP19021 973 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 TRIM59Q8IWR1 403 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 HEMGNQ9BXL5 484 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 TRIM4Q9C037 500 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 TDRD3Q9H7E2 651 aaKnown RBP16.52■□□□□ 0.23
PTPRF-206ENST00000429895 HEY1Q9Y5J3 304 aa16.52■□□□□ 0.23
PTPRF-206ENST00000429895 GOLGA8MH3BSY2 632 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 GNAT1P11488 350 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CCNE1P24864 410 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CDC25BP30305 580 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 PSMD2Q13200 908 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CAPRIN1Q14444 709 aaKnown RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 RMDN3Q96TC7 470 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 KDM5AP29375 1690 aaKnown RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 PZPP20742 1482 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 ATP6V1E1P36543 226 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 ZNF568Q3ZCX4 644 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 GLE1Q53GS7 698 aaKnown RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 SNRNP48Q6IEG0 339 aaKnown RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CPVLQ9H3G5 476 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 NDST4Q9H3R1 872 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 HPCAL4Q9UM19 191 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CLDN3O15551 220 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 TSPY1Q01534 308 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 CENPUQ71F23 418 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 LINC00301Q8NCQ3 95 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 HIPK4Q8NE63 616 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 PIGBQ92521 554 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 HMGB1P1B2RPK0 211 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 RASGRF2O14827 1237 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 HSPA6P17066 643 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 TAC1P20366 129 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 KIAA1755Q5JYT7 1200 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 TMEM179Q6ZVK1 233 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 RABGGTAQ92696 567 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 IQANK1A0A1B0GTG1 560 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 NFKBIAP25963 317 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 ZNF699Q32M78 642 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 RHPN2Q8IUC4 686 aa16.51■□□□□ 0.23
PTPRF-206ENST00000429895 FOXP4Q8IVH2 680 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 SCHIP1Q9P0W5 487 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-206ENST00000429895 HSPA8P11142 646 aaKnown RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 TAF1BQ53T94 588 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 URGCPQ8TCY9 931 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 DRC3Q9H069 523 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 SAYSD1Q9NPB0 183 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 SRPRBQ9Y5M8 271 aaKnown RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 TMEM247A6NEH6 219 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 HUS1O60921 280 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 JAK3P52333 1124 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 NNTQ13423 1086 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 AFF4Q9UHB7 1163 aaKnown RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 FAM213AQ9BRX8 229 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 ZMYND12Q9H0C1 365 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 RWDD2BP57060 319 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 ZNF467Q7Z7K2 595 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 LUC7L3O95232 432 aaKnown RBP16.5■□□□□ 0.23
PTPRF-206ENST00000429895 SEPT2Q15019 361 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 KRT80Q6KB66 452 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 TTC17Q96AE7 1141 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 ZBTB18Q99592 522 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 STAP2Q9UGK3 403 aa16.5■□□□□ 0.23
PTPRF-206ENST00000429895 VGLL3A8MV65 326 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 SLC16A4O15374 487 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 ANP32DO95626 131 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 GPC3P51654 580 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 HDLBPQ00341 1268 aaKnown RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 PDIK1LQ8N165 341 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 TDRD7Q8NHU6 1098 aaKnown RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 TRAIPQ9BWF2 469 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 BSDC1Q9NW68 430 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 DNAJC8O75937 253 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 LDHAP00338 332 aaKnown RBP16.49■□□□□ 0.23
PTPRF-206ENST00000429895 VPS39Q96JC1 886 aa16.49■□□□□ 0.23
PTPRF-206ENST00000429895 KLC2Q9H0B6 622 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms