RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 BRD4O60885 1362 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 LRRIQ4A6NIV6 560 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CHURC1-FNTBB4DL54 471 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 OPLAHO14841 1288 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 TOM1L1O75674 476 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 APOA1P02647 267 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 INHBAP08476 426 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PSMA4P25789 261 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 ADCY8P40145 1251 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MSH2P43246 934 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 RANBP1P43487 201 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 ARHGDIBP52566 201 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 COPB1P53618 953 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 NCKAP1LP55160 1127 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CDC16Q13042 620 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PTPROQ16827 1216 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 FAM117BQ6P1L5 589 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 B4GALNT4Q76KP1 1039 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DCUN1D1Q96GG9 259 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DHRS1Q96LJ7 313 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 FAM227BQ96M60 508 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SLC9A7Q96T83 725 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC2Q9BYS8 371 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PRDM16Q9HAZ2 1276 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 APOBEC2Q9Y235 224 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DENND3A2RUS2 1198 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MEI4A8MW99 385 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SCO1O75880 301 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CYP7B1O75881 506 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MYL3P08590 195 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MYBP10242 640 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MLNP12872 115 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SOAT1P35610 550 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SFSWAPQ12872 951 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 TAF5Q15542 800 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 TPTE2Q6XPS3 522 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 BRD8Q9H0E9 1235 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CECR2Q9BXF3 1484 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MAGEB6P1A0A0J9YX57 407 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 POC1B-GALNT4F8VUJ3 575 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 HNRNPRO43390 633 aaKnown RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 DAB1O75553 588 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 LRPAP1P30533 357 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 POLGP54098 1239 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 KLC1Q07866 573 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 NOLC1Q14978 699 aaKnown RBP eCLIP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 ACAP2Q15057 778 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 CCDC60Q8IWA6 550 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 COLGALT2Q8IYK4 626 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SCYL3Q8IZE3 742 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 SPRTNQ9H040 489 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-202ENST00000375405 MOCS1Q9NZB8 636 aa4.96□□□□□ -1.62
SCN1A-202ENST00000375405 PIP5K1CO60331 668 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ALDH1A1P00352 501 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SPARCP09486 303 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 GNAQP50148 359 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 BCAP31P51572 246 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 STXBP1P61764 594 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FBXO42Q6P3S6 717 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RFX6Q8HWS3 928 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 C17orf53Q8N3J3 647 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ESR2Q92731 530 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RHOBTB2Q9BYZ6 727 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 LRRC4Q9HBW1 653 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 GGT7Q9UJ14 662 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ALG6Q9Y672 507 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MYO9BQ13459 2157 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 F6X3S4 739 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ECDO95905 644 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 U2AF2P26368 475 aaKnown RBP eCLIP4.95□□□□□ -1.621e-6■■■□□ 14.9
SCN1A-202ENST00000375405 CEBPGP53567 150 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 RPS7P62081 194 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZRANB3Q5FWF4 1079 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 SCARA3Q6AZY7 606 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MAML1Q92585 1016 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 INPP5DQ92835 1189 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FOPNLQ96NB1 174 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 FSD1LQ9BXM9 530 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NFKBIZQ9BYH8 718 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CARMIL2Q6F5E8 1435 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ZNF233A6NK53 670 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NDUFAB1O14561 156 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 EXOC3O60645 756 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 UPP2O95045 317 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CPP00450 1065 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 ACADMP11310 421 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 MTA1Q13330 715 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CNGA3Q16281 694 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 DSTYKQ6XUX3 929 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PCGF5Q86SE9 256 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 TRPV6Q9H1D0 765 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 UPF3AQ9H1J1 476 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 NDOR1Q9UHB4 597 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PNMA8BQ9ULN7 279 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 JRKLQ9Y4A0 524 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 WDR97A6NE52 1622 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 AREL1O15033 823 aa4.95□□□□□ -1.62
SCN1A-202ENST00000375405 LDHBP07195 334 aaKnown RBP4.95□□□□□ -1.62
SCN1A-202ENST00000375405 PMS2P54278 862 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms