RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 RABEP2Q9H5N1 569 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 PTPN22Q9Y2R2 807 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 CIITAP33076 1130 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ECE1P42892 770 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF394Q53GI3 561 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 STYK1Q6J9G0 422 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF280CQ8ND82 737 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ADAMTS1Q9UHI8 967 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 FLT1P17948 1338 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 NR3C1P04150 777 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 TMEM35BQ8NCS4 154 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.98■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF70Q9UC06 446 aaPredicted RBP19.98■□□□□ 0.79
PCDH1-201ENST00000287008 ENC1O14682 589 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 CDC25BP30305 580 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 PROM2Q8N271 834 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 KCTD6Q8NC69 237 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 NDUFB10O96000 172 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF18P17022 549 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 DYNLT1P63172 113 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 RAD54LQ92698 747 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 LXNQ9BS40 222 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 TXNP10599 105 aaKnown RBP19.98■□□□□ 0.79
PCDH1-201ENST00000287008 EPHB1P54762 984 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 POTEDQ86YR6 584 aa19.98■□□□□ 0.79
PCDH1-201ENST00000287008 TRPM1Q7Z4N2 1603 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 DPEP1P16444 411 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 TSPY1Q01534 308 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 SPZ1Q9BXG8 430 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 LMCD1Q9NZU5 365 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 POTEFA5A3E0 1075 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 POTEIP0CG38 1075 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF157P51786 506 aaPredicted RBP19.97■□□□□ 0.79
PCDH1-201ENST00000287008 ATP11AP98196 1134 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 KRT31Q15323 416 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF699Q32M78 642 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 TCP11X2Q5H9J9 407 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 POTEGQ6S5H5 508 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 POTEEQ6S8J3 1075 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 ARHGEF18Q6ZSZ5 1173 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 SCN4BQ8IWT1 228 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 FAM213AQ9BRX8 229 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 SCINQ9Y6U3 715 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 USP42Q9H9J4 1324 aaKnown RBP19.97■□□□□ 0.79
PCDH1-201ENST00000287008 TDP2O95551 362 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 SNAPC2Q13487 334 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 PTPN21Q16825 1174 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 SBK1Q52WX2 424 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 NYAP2Q9P242 653 aa19.97■□□□□ 0.79
PCDH1-201ENST00000287008 NOL3O60936 208 aaKnown RBP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 GMPSP49915 693 aaPredicted RBP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 STAG2Q8N3U4 1231 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 URGCPQ8TCY9 931 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 NRBP1Q9UHY1 535 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 GCLMP48507 274 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 GOLGA8FQ08AF8 430 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF543Q08ER8 600 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 GOLGA8DPQ0D2H9 430 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 SF3A3Q12874 501 aaKnown RBP eCLIP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 CDC42EP5Q6NZY7 148 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 SLC9A2Q9UBY0 812 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 ARHGEF40Q8TER5 1519 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 LRRC7Q96NW7 1537 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 EPHA7Q15375 998 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 DARS2Q6PI48 645 aaKnown RBP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 PHLDB2Q86SQ0 1253 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 POLD4Q9HCU8 107 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 RNF14Q9UBS8 474 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 RPS12P25398 132 aaKnown RBP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 NCAPGQ9BPX3 1015 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 MRPL4Q9BYD3 311 aaKnown RBP19.96■□□□□ 0.79
PCDH1-201ENST00000287008 FAM114A2Q9NRY5 505 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 DNAJC12Q9UKB3 198 aa19.96■□□□□ 0.79
PCDH1-201ENST00000287008 ECEL1O95672 775 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 C1orf228Q6PIY5 440 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 ADAM22Q9P0K1 906 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 POC1B-GALNT4F8VUJ3 575 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 SLC4A1P02730 911 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 CYP27A1Q02318 531 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 GAS2L3Q86XJ1 694 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 LMTK2Q8IWU2 1503 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 PSMD14O00487 310 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 BNIP3LO60238 219 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 HEXIM1O94992 359 aaKnown RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 NFKBIAP25963 317 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 BASP1P80723 227 aaKnown RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 SNX1Q13596 522 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 VSTM4Q8IW00 320 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 NHEJ1Q9H9Q4 299 aaPredicted RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 BUB1BO60566 1050 aaPredicted RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 CPP00450 1065 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 STAT5BP51692 787 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 NXNQ6DKJ4 435 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 BZW1Q7L1Q6 419 aaKnown RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 RHOT2Q8IXI1 618 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 FAM71BQ8TC56 605 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 ZNF668Q96K58 619 aaPredicted RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 CFAP57Q96MR6 1250 aa19.95■□□□□ 0.78
PCDH1-201ENST00000287008 PARK7Q99497 189 aaKnown RBP19.95■□□□□ 0.78
PCDH1-201ENST00000287008 ZWINTO95229 277 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms