RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YJR154WP47181 346 aa5.56□□□□□ -1.52
DEF1YKL054C SAM50P53969 484 aa5.56□□□□□ -1.52
DEF1YKL054C MRP51Q02950 344 aa5.56□□□□□ -1.52
DEF1YKL054C GIP3Q03016 1276 aa5.56□□□□□ -1.52
DEF1YKL054C UBX2Q04228 584 aa5.56□□□□□ -1.52
DEF1YKL054C CDC123Q05791 360 aa5.56□□□□□ -1.52
DEF1YKL054C SPO77Q06134 477 aa5.56□□□□□ -1.52
DEF1YKL054C MSH5Q12175 901 aa5.56□□□□□ -1.52
DEF1YKL054C MAS2P11914 482 aa5.56□□□□□ -1.52
DEF1YKL054C TYR1P20049 452 aa5.56□□□□□ -1.52
DEF1YKL054C SAC1P32368 623 aaKnown RBP5.56□□□□□ -1.52
DEF1YKL054C HIS2P38635 335 aa5.56□□□□□ -1.52
DEF1YKL054C EGD2P38879 174 aaKnown RBP5.56□□□□□ -1.52
DEF1YKL054C YAL037WP39728 267 aa5.56□□□□□ -1.52
DEF1YKL054C RFC4P40339 323 aaKnown RBP5.56□□□□□ -1.52
DEF1YKL054C MRX5P47007 382 aa5.56□□□□□ -1.52
DEF1YKL054C STB4P50104 949 aa5.56□□□□□ -1.52
DEF1YKL054C SKI8Q02793 397 aaPredicted RBP5.56□□□□□ -1.52
DEF1YKL054C GMC2Q06201 188 aa5.56□□□□□ -1.52
DEF1YKL054C SHS1Q07657 551 aa5.56□□□□□ -1.52
DEF1YKL054C YER145C-AA0A023PYF4 145 aa5.55□□□□□ -1.52
DEF1YKL054C NHP6BP11633 99 aaKnown RBP5.55□□□□□ -1.52
DEF1YKL054C RAD9P14737 1309 aa5.55□□□□□ -1.52
DEF1YKL054C CTR86P25355 563 aa5.55□□□□□ -1.52
DEF1YKL054C GDH2P33327 1092 aaKnown RBP5.55□□□□□ -1.52
DEF1YKL054C HIS7P33734 552 aaKnown RBP5.55□□□□□ -1.52
DEF1YKL054C YGR067CP53243 804 aa5.55□□□□□ -1.52
DEF1YKL054C MTQ1P53944 314 aa5.55□□□□□ -1.52
DEF1YKL054C APM1Q00776 475 aaPredicted RBP5.55□□□□□ -1.52
DEF1YKL054C BRR1Q99177 341 aaPredicted RBP5.55□□□□□ -1.52
DEF1YKL054C WHI2P12611 486 aa5.55□□□□□ -1.52
DEF1YKL054C RAD57P25301 460 aa5.55□□□□□ -1.52
DEF1YKL054C YKL097CP34245 136 aa5.55□□□□□ -1.52
DEF1YKL054C YER079WP40052 210 aaKnown RBP5.55□□□□□ -1.52
DEF1YKL054C TDA10P42938 290 aa5.55□□□□□ -1.52
DEF1YKL054C ABM1P47146 123 aa5.55□□□□□ -1.52
DEF1YKL054C NRD1P53617 575 aaKnown RBP RIP-Chip data5.55□□□□□ -1.52not detected
DEF1YKL054C SNO2P53823 222 aa5.55□□□□□ -1.52
DEF1YKL054C YDR222WQ04925 415 aa5.55□□□□□ -1.52
DEF1YKL054C FRE7Q12333 620 aa5.55□□□□□ -1.52
DEF1YKL054C YCL012CQ8J0M4 134 aa5.55□□□□□ -1.52
DEF1YKL054C MES1P00958 751 aaKnown RBP5.54□□□□□ -1.52
DEF1YKL054C MET3P08536 511 aa5.54□□□□□ -1.52
DEF1YKL054C NUP1P20676 1076 aa5.54□□□□□ -1.52
DEF1YKL054C UTR1P21373 530 aa5.54□□□□□ -1.52
DEF1YKL054C PPZ1P26570 692 aa5.54□□□□□ -1.52
DEF1YKL054C PRR1P28708 518 aa5.54□□□□□ -1.52
DEF1YKL054C LST4P34239 828 aa5.54□□□□□ -1.52
DEF1YKL054C YMR262WP38430 313 aa5.54□□□□□ -1.52
DEF1YKL054C MPS1P54199 764 aa5.54□□□□□ -1.52
DEF1YKL054C SMP3Q04174 516 aa5.54□□□□□ -1.52
DEF1YKL054C YMR034CQ05131 434 aaPredicted RBP5.54□□□□□ -1.52
DEF1YKL054C YPR1Q12458 312 aa5.54□□□□□ -1.52
DEF1YKL054C PRP18P33411 251 aaPredicted RBP5.54□□□□□ -1.52
DEF1YKL054C SKT5P34226 696 aa5.54□□□□□ -1.52
DEF1YKL054C SDS3P40505 327 aa5.54□□□□□ -1.52
DEF1YKL054C YIR016WP40572 265 aa5.54□□□□□ -1.52
DEF1YKL054C PMT6P42934 759 aa5.54□□□□□ -1.52
DEF1YKL054C YFL015CP43578 164 aa5.54□□□□□ -1.52
DEF1YKL054C PFA5Q03289 374 aa5.54□□□□□ -1.52
DEF1YKL054C DCR2Q05924 578 aa5.54□□□□□ -1.52
DEF1YKL054C SIA1Q12212 622 aa5.54□□□□□ -1.52
DEF1YKL054C NCB2Q92317 146 aa5.54□□□□□ -1.52
DEF1YKL054C THP2O13539 261 aaKnown RBP5.53□□□□□ -1.52
DEF1YKL054C ATP7P30902 174 aa5.53□□□□□ -1.52
DEF1YKL054C REC114P32841 428 aa5.53□□□□□ -1.52
DEF1YKL054C VAM7P32912 316 aa5.53□□□□□ -1.52
DEF1YKL054C MRPS5P33759 307 aa5.53□□□□□ -1.52
DEF1YKL054C COA1P40452 197 aa5.53□□□□□ -1.52
DEF1YKL054C LYS12P40495 371 aaKnown RBP5.53□□□□□ -1.52
DEF1YKL054C ECL1P48235 211 aa5.53□□□□□ -1.52
DEF1YKL054C NAS6P50086 228 aa5.53□□□□□ -1.52
DEF1YKL054C YGR168CP53293 376 aa5.53□□□□□ -1.52
DEF1YKL054C ASI1P54074 624 aa5.53□□□□□ -1.52
DEF1YKL054C NAT4Q04751 285 aa5.53□□□□□ -1.52
DEF1YKL054C CDA2Q06703 312 aa5.53□□□□□ -1.52
DEF1YKL054C RAD1P06777 1100 aa5.52□□□□□ -1.53
DEF1YKL054C MATALPHA2P0CY08 210 aa5.52□□□□□ -1.53
DEF1YKL054C HMLALPHA2P0CY09 210 aa5.52□□□□□ -1.53
DEF1YKL054C SNF3P10870 884 aa5.52□□□□□ -1.53
DEF1YKL054C UBC6P33296 250 aaPredicted RBP5.52□□□□□ -1.53
DEF1YKL054C TAF14P35189 244 aa5.52□□□□□ -1.53
DEF1YKL054C URA8P38627 578 aaPredicted RBP5.52□□□□□ -1.53
DEF1YKL054C RPC17P47076 161 aa5.52□□□□□ -1.53
DEF1YKL054C PKP2P53170 491 aa5.52□□□□□ -1.53
DEF1YKL054C SLI1P53304 468 aa5.52□□□□□ -1.53
DEF1YKL054C GPI15P53961 229 aa5.52□□□□□ -1.53
DEF1YKL054C YDR387CQ04162 555 aa5.52□□□□□ -1.53
DEF1YKL054C IVY1Q04934 453 aa5.52□□□□□ -1.53
DEF1YKL054C GGA1Q06336 557 aa5.52□□□□□ -1.53
DEF1YKL054C YOL075CQ08234 1294 aa5.52□□□□□ -1.53
DEF1YKL054C ATG34Q12292 412 aa5.52□□□□□ -1.53
DEF1YKL054C DST1P07273 309 aa5.52□□□□□ -1.53
DEF1YKL054C MRP2P10663 115 aaPredicted RBP5.52□□□□□ -1.53
DEF1YKL054C MAK32P23060 363 aa5.52□□□□□ -1.53
DEF1YKL054C MIT1P40002 666 aa5.52□□□□□ -1.53
DEF1YKL054C YFL040WP43562 540 aa5.52□□□□□ -1.53
DEF1YKL054C LDS2Q08218 356 aa5.52□□□□□ -1.53
DEF1YKL054C GRE1Q08969 168 aa5.52□□□□□ -1.53
DEF1YKL054C RKM5Q12367 367 aa5.52□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 130.1 ms