RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W WWM1P43582 211 aaKnown RBP2.95□□□□□ -1.94
UPF3YGR072W RRP46P53256 223 aaPredicted RBP2.95□□□□□ -1.94
UPF3YGR072W WSC2P53832 503 aa2.95□□□□□ -1.94
UPF3YGR072W ASA1Q06822 443 aa2.95□□□□□ -1.94
UPF3YGR072W RAX1Q08760 435 aa2.95□□□□□ -1.94
UPF3YGR072W PAB1P04147 577 aaKnown RBP RIP-Chip data2.94□□□□□ -1.94not detected
UPF3YGR072W RNA1P11745 407 aaKnown RBP2.94□□□□□ -1.94
UPF3YGR072W SAG1P20840 650 aa2.94□□□□□ -1.94
UPF3YGR072W YEF1P32622 495 aa2.94□□□□□ -1.94
UPF3YGR072W SUR1P33300 382 aa2.94□□□□□ -1.94
UPF3YGR072W MCR1P36060 302 aaKnown RBP2.94□□□□□ -1.94
UPF3YGR072W YHR177WP38867 453 aa2.94□□□□□ -1.94
UPF3YGR072W COX14P39103 70 aa2.94□□□□□ -1.94
UPF3YGR072W LYS12P40495 371 aaKnown RBP2.94□□□□□ -1.94
UPF3YGR072W PMT5P52867 743 aa2.94□□□□□ -1.94
UPF3YGR072W RET3P53600 189 aa2.94□□□□□ -1.94
UPF3YGR072W TRM112P53738 135 aaPredicted RBP2.94□□□□□ -1.94
UPF3YGR072W YNL146WP53906 100 aa2.94□□□□□ -1.94
UPF3YGR072W HXT11P54862 567 aa2.94□□□□□ -1.94
UPF3YGR072W LOT6Q07923 191 aa2.94□□□□□ -1.94
UPF3YGR072W ESA1Q08649 445 aa2.94□□□□□ -1.94
UPF3YGR072W MDY2Q12285 212 aa2.94□□□□□ -1.94
UPF3YGR072W HIF1Q12373 385 aa2.94□□□□□ -1.94
UPF3YGR072W SFG1Q12507 346 aa2.94□□□□□ -1.94
UPF3YGR072W HTZ1Q12692 134 aaKnown RBP2.94□□□□□ -1.94
UPF3YGR072W RNR2P09938 399 aaKnown RBP2.93□□□□□ -1.94
UPF3YGR072W MAS2P11914 482 aa2.93□□□□□ -1.94
UPF3YGR072W CLN3P13365 580 aa2.93□□□□□ -1.94
UPF3YGR072W EXG1P23776 448 aaKnown RBP2.93□□□□□ -1.94
UPF3YGR072W RNA14P25298 677 aaKnown RBP2.93□□□□□ -1.94
UPF3YGR072W AVT5P38176 459 aa2.93□□□□□ -1.94
UPF3YGR072W RRF1P38771 230 aa2.93□□□□□ -1.94
UPF3YGR072W YDR089WP38966 869 aa2.93□□□□□ -1.94
UPF3YGR072W JLP2P40206 208 aa2.93□□□□□ -1.94
UPF3YGR072W OSW5P40219 148 aa2.93□□□□□ -1.94
UPF3YGR072W MAM33P40513 266 aa2.93□□□□□ -1.94
UPF3YGR072W YIL029CP40538 142 aa2.93□□□□□ -1.94
UPF3YGR072W SPG5P42933 373 aa2.93□□□□□ -1.94
UPF3YGR072W NCA3P46955 337 aa2.93□□□□□ -1.94
UPF3YGR072W GPI8P49018 411 aa2.93□□□□□ -1.94
UPF3YGR072W ARP5P53946 755 aa2.93□□□□□ -1.94
UPF3YGR072W HER2Q03557 464 aa2.93□□□□□ -1.94
UPF3YGR072W ARR1Q06596 294 aa2.93□□□□□ -1.94
UPF3YGR072W APC2Q12440 853 aa2.93□□□□□ -1.94
UPF3YGR072W FSH3Q99369 266 aa2.93□□□□□ -1.94
UPF3YGR072W HHF1P02309 103 aaKnown RBP2.92□□□□□ -1.94
UPF3YGR072W CAP2P13517 287 aa2.92□□□□□ -1.94
UPF3YGR072W DAL80P26343 269 aa2.92□□□□□ -1.94
UPF3YGR072W RAD5P32849 1169 aaPredicted RBP2.92□□□□□ -1.94
UPF3YGR072W PTK1P36002 662 aaPredicted RBP2.92□□□□□ -1.94
UPF3YGR072W EBP2P36049 427 aaKnown RBP2.92□□□□□ -1.94
UPF3YGR072W YHR131CP38835 850 aa2.92□□□□□ -1.94
UPF3YGR072W PCL7P40186 285 aa2.92□□□□□ -1.94
UPF3YGR072W SEC9P40357 651 aa2.92□□□□□ -1.94
UPF3YGR072W SIM1P40472 476 aa2.92□□□□□ -1.94
UPF3YGR072W SHE10P53075 577 aa2.92□□□□□ -1.94
UPF3YGR072W YGL114WP53134 725 aa2.92□□□□□ -1.94
UPF3YGR072W PRM6Q04705 352 aa2.92□□□□□ -1.94
UPF3YGR072W YOL075CQ08234 1294 aa2.92□□□□□ -1.94
UPF3YGR072W CDC37P06101 506 aaKnown RBP2.91□□□□□ -1.94
UPF3YGR072W PIS1P06197 220 aaKnown RBP2.91□□□□□ -1.94
UPF3YGR072W YLL053CP0CD98 152 aa2.91□□□□□ -1.94
UPF3YGR072W GCD2P12754 651 aaPredicted RBP2.91□□□□□ -1.94
UPF3YGR072W HXT2P23585 541 aa2.91□□□□□ -1.94
UPF3YGR072W CPR4P25334 318 aa2.91□□□□□ -1.94
UPF3YGR072W PET18P25362 215 aa2.91□□□□□ -1.94
UPF3YGR072W AGA1P32323 725 aa2.91□□□□□ -1.94
UPF3YGR072W YKL097CP34245 136 aa2.91□□□□□ -1.94
UPF3YGR072W GEP4P38812 185 aa2.91□□□□□ -1.94
UPF3YGR072W LIN1P38852 340 aaPredicted RBP2.91□□□□□ -1.94
UPF3YGR072W SSO2P39926 295 aa2.91□□□□□ -1.94
UPF3YGR072W PRM5P40476 318 aa2.91□□□□□ -1.94
UPF3YGR072W YHC3P47040 408 aa2.91□□□□□ -1.94
UPF3YGR072W MTQ1P53944 314 aa2.91□□□□□ -1.94
UPF3YGR072W PRO2P54885 456 aaKnown RBP2.91□□□□□ -1.94
UPF3YGR072W YMR102CQ03177 834 aa2.91□□□□□ -1.94
UPF3YGR072W YMR010WQ03687 405 aa2.91□□□□□ -1.94
UPF3YGR072W MDM36Q06820 579 aa2.91□□□□□ -1.94
UPF3YGR072W SHS1Q07657 551 aa2.91□□□□□ -1.94
UPF3YGR072W EAF3Q12432 401 aa2.91□□□□□ -1.94
UPF3YGR072W AHC1Q12433 566 aa2.91□□□□□ -1.94
UPF3YGR072W YIL002W-AQ3E7Z5 69 aa2.91□□□□□ -1.94
UPF3YGR072W MEX67Q99257 599 aaKnown RBP2.91□□□□□ -1.94
UPF3YGR072W YOR338WQ99326 363 aa2.91□□□□□ -1.94
UPF3YGR072W CBP2P03874 630 aaPredicted RBP2.9□□□□□ -1.95
UPF3YGR072W SSC1P0CS90 654 aaKnown RBP2.9□□□□□ -1.95
UPF3YGR072W CBS2P14905 389 aa2.9□□□□□ -1.95
UPF3YGR072W DBR1P24309 405 aaKnown RBP2.9□□□□□ -1.95
UPF3YGR072W PAD1P33751 242 aaKnown RBP RIP-Chip data2.9□□□□□ -1.95not detected
UPF3YGR072W TIR2P33890 251 aa2.9□□□□□ -1.95
UPF3YGR072W YHR122WP38829 231 aa2.9□□□□□ -1.95
UPF3YGR072W ALP1P38971 573 aa2.9□□□□□ -1.95
UPF3YGR072W LCP5P40079 357 aaPredicted RBP2.9□□□□□ -1.95
UPF3YGR072W MRM2P53123 320 aa2.9□□□□□ -1.95
UPF3YGR072W RRN9P53437 365 aa2.9□□□□□ -1.95
UPF3YGR072W CWC25P53854 179 aaKnown RBP2.9□□□□□ -1.95
UPF3YGR072W NUP116Q02630 1113 aa2.9□□□□□ -1.95
UPF3YGR072W ADD37Q03233 198 aa2.9□□□□□ -1.95
UPF3YGR072W VPS20Q04272 221 aa2.9□□□□□ -1.95
UPF3YGR072W AIM33Q04516 312 aa2.9□□□□□ -1.95
Retrieved 100 of 5,963 RNA–protein pairs in 79.9 ms