RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZNF200P98182 395 aaPredicted RBP21.7■■□□□ 1.06
UPF1-209ENST00000600310 CEBPZQ03701 1054 aaKnown RBP21.7■■□□□ 1.06
UPF1-209ENST00000600310 GRIK4Q16099 956 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 C4orf19Q8IY42 314 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 ERMNQ8TAM6 284 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 LMBR1Q8WVP7 490 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 CTAGE1Q96RT6 745 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 LXNQ9BS40 222 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 ZSWIM4Q9H7M6 989 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 PDLIM7Q9NR12 457 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 NRBP2Q9NSY0 501 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 TFIP11Q9UBB9 837 aaKnown RBP21.7■■□□□ 1.06
UPF1-209ENST00000600310 NR2E3Q9Y5X4 410 aa21.7■■□□□ 1.06
UPF1-209ENST00000600310 CYP4A11Q02928 519 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 CTTNQ14247 550 aaKnown RBP21.69■■□□□ 1.06
UPF1-209ENST00000600310 SLC39A14Q15043 492 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 XKR3Q5GH77 459 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 TUFT1Q9NNX1 390 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 TMEM39AQ9NV64 488 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 WRAP73Q9P2S5 460 aaPredicted RBP21.69■■□□□ 1.06
UPF1-209ENST00000600310 LRWD1Q9UFC0 647 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 TBX21Q9UL17 535 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 STK24Q9Y6E0 443 aa21.69■■□□□ 1.06
UPF1-209ENST00000600310 VWA3AA6NCI4 1184 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 KIAA0355O15063 1070 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 LYPLA2O95372 231 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 SPATA31C1P0DKV0 1188 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 FOXD4L6Q3SYB3 417 aaPredicted RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 ZNF484Q5JVG2 852 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 FOXD4L3Q6VB84 417 aaPredicted RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 TRMT1LQ7Z2T5 733 aaKnown RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 SH3RF1Q7Z6J0 888 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 TPH2Q8IWU9 490 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 LINC00301Q8NCQ3 95 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 POLR3CQ9BUI4 534 aaPredicted RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 NIFKQ9BYG3 293 aaKnown RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 CIZ1Q9ULV3 898 aaPredicted RBP21.68■■□□□ 1.06
UPF1-209ENST00000600310 NOD1Q9Y239 953 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 ATP6V1DQ9Y5K8 247 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 COL1A2P08123 1366 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 ALPK3Q96L96 1907 aa21.68■■□□□ 1.06
UPF1-209ENST00000600310 MBLAC1A4D2B0 266 aaPredicted RBP21.67■■□□□ 1.06
UPF1-209ENST00000600310 ZBTB42B2RXF5 422 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 TREHO43280 583 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 YEATS4O95619 227 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 CYP2C9P11712 490 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 RPA1P27694 616 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 DNM1Q05193 864 aaKnown RBP21.67■■□□□ 1.06
UPF1-209ENST00000600310 MARCH8Q5T0T0 291 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 HAUS3Q68CZ6 603 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 CATSPER3Q86XQ3 398 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 AK8Q96MA6 479 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 PRDM5Q9NQX1 630 aaPredicted RBP21.67■■□□□ 1.06
UPF1-209ENST00000600310 CFAP45Q9UL16 551 aa21.67■■□□□ 1.06
UPF1-209ENST00000600310 TRIM43BA6NCK2 446 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 DDX11L8A8MPP1 907 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 MED24O75448 989 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 MUTP22033 750 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 MARCKSP29966 332 aaPredicted RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 IGBP1P78318 339 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 PTK7Q13308 1070 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 STK38Q15208 465 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 TARBP2Q15633 366 aaKnown RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 ANO5Q75V66 913 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 SERINC5Q86VE9 423 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 TRAPPC12Q8WVT3 735 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 TRIM43Q96BQ3 446 aaPredicted RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 PRKAG2Q9UGJ0 569 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 SEPT9Q9UHD8 586 aaPredicted RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 TUBE1Q9UJT0 475 aa21.66■■□□□ 1.06
UPF1-209ENST00000600310 FBXO2Q9UK22 296 aaPredicted RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 SRPRBQ9Y5M8 271 aaKnown RBP21.66■■□□□ 1.06
UPF1-209ENST00000600310 PP2D1A8MPX8 630 aa21.65■■□□□ 1.06
UPF1-209ENST00000600310 YWHABP31946 246 aaKnown RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 LONP1P36776 959 aaKnown RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 CCT6AP40227 531 aaKnown RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 GRIN1Q05586 938 aa21.65■■□□□ 1.06
UPF1-209ENST00000600310 KRT79Q5XKE5 535 aa21.65■■□□□ 1.06
UPF1-209ENST00000600310 SNX29Q8TEQ0 813 aa21.65■■□□□ 1.06
UPF1-209ENST00000600310 DHX38Q92620 1227 aaKnown RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 NOC4LQ9BVI4 516 aaKnown RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 ZMYND8Q9ULU4 1186 aaPredicted RBP21.65■■□□□ 1.06
UPF1-209ENST00000600310 SPTLC2O15270 562 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 PPP6R2O75170 966 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 XRCC6P12956 609 aaKnown RBP eCLIP21.64■■□□□ 1.05
UPF1-209ENST00000600310 KLRC1P26715 233 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 CDC25AP30304 524 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 RBL2Q08999 1139 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 TAF2Q6P1X5 1199 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 MTHFD1LQ6UB35 978 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 OTUD6AQ7L8S5 288 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 MMTAG2Q9BU76 263 aaKnown RBP21.64■■□□□ 1.05
UPF1-209ENST00000600310 HIPK3Q9H422 1215 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 PCDHA2Q9Y5H9 948 aa21.64■■□□□ 1.05
UPF1-209ENST00000600310 MYH9P35579 1960 aaKnown RBP21.63■■□□□ 1.05
UPF1-209ENST00000600310 TMEM150BA6NC51 233 aa21.63■■□□□ 1.05
UPF1-209ENST00000600310 MAGEB2O15479 319 aa21.63■■□□□ 1.05
UPF1-209ENST00000600310 SYN1P17600 705 aa21.63■■□□□ 1.05
UPF1-209ENST00000600310 BFSP2Q13515 415 aa21.63■■□□□ 1.05
UPF1-209ENST00000600310 ECM1Q16610 540 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms