RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ATP2B3Q16720 1220 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 TRIM61Q5EBN2 209 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 BMP2KLQ5H9B9 411 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 YOD1Q5VVQ6 348 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 DPP8Q6V1X1 898 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 LRRC69Q6ZNQ3 347 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 CEP120Q8N960 986 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 XAGE2Q96GT9 111 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 LRGUKQ96M69 825 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 AP1M1Q9BXS5 423 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 GLIS2Q9BZE0 524 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 GPR108Q9NPR9 543 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 ECHDC1Q9NTX5 307 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 TSR3Q9UJK0 312 aaKnown RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 APOBEC2Q9Y235 224 aaKnown RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 TTLL3Q9Y4R7 772 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 AFG3L2Q9Y4W6 797 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 YDJCA8MPS7 323 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 CILPO75339 1184 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 CHGBP05060 677 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 MYBL2P10244 700 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 NEK4P51957 841 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 PFKPQ01813 784 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 SFSWAPQ12872 951 aaKnown RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 CDC37L1Q7L3B6 337 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 TBC1D1Q86TI0 1168 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 TXNRD3Q86VQ6 643 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 C1orf127Q8N9H9 656 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 USP7Q93009 1102 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 NUP88Q99567 741 aaPredicted RBP7.86□□□□□ -1.15
VPS53-217ENST00000575100 CEP44Q9C0F1 390 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 BOLA2Q9H3K6 86 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 SCN9AQ15858 1988 aa7.86□□□□□ -1.15
VPS53-217ENST00000575100 TTC41PQ6P2S7 1318 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 APPP05067 770 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 IFIT1P09914 478 aaKnown RBP7.85□□□□□ -1.15
VPS53-217ENST00000575100 GUCY2CP25092 1073 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 MPP1Q00013 466 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 MLLT1Q03111 559 aaPredicted RBP7.85□□□□□ -1.15
VPS53-217ENST00000575100 KIF22Q14807 665 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 AGAP9Q5VTM2 703 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 PEAR1Q5VY43 1037 aaPredicted RBP7.85□□□□□ -1.15
VPS53-217ENST00000575100 B3GNT9Q6UX72 402 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 DTHD1Q6ZMT9 781 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 GALNT5Q7Z7M9 940 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 SNX32Q86XE0 403 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 ANP32BQ92688 251 aaKnown RBP7.85□□□□□ -1.15
VPS53-217ENST00000575100 DPF2Q92785 391 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 CDC6Q99741 560 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 CXorf56Q9H5V9 222 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 EFCC1Q9HA90 598 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 PDLIM7Q9NR12 457 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 C1orf112Q9NSG2 853 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 TBC1D22BQ9NU19 505 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 RRN3Q9NYV6 651 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 DACH1Q9UI36 760 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 PRDM4Q9UKN5 801 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 IRS2Q9Y4H2 1338 aa7.85□□□□□ -1.15
VPS53-217ENST00000575100 TRBV23-1A0A0A0MS06 115 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 TGFBR3LH3BV60 316 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 M0R3H8 397 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 KPNA6O60684 536 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 RAD17O75943 681 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 HOXB3P14651 431 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 PSMA3P25788 255 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 PIK3CAP42336 1068 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 RAD52P43351 418 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 PHKA1P46020 1223 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 NRLP54845 237 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ERVK-21P61565 698 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 NOGQ13253 232 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ZNF460Q14592 562 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 PDCD2Q16342 344 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 LINC01559Q495D7 138 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 GJC2Q5T442 439 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 VHLLQ6RSH7 139 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 CYP2U1Q7Z449 544 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 OTUD6BQ8N6M0 293 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 LPIN2Q92539 896 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ZNF830Q96NB3 372 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 TM9SF2Q99805 663 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 MCOLN1Q9GZU1 580 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 RAB6BQ9NRW1 208 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 CNOT7Q9UIV1 285 aaKnown RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 TPCN1Q9ULQ1 816 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 TNPO3Q9Y5L0 923 aaKnown RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 HRH3Q9Y5N1 445 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ARAP2Q8WZ64 1704 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ZNF646O15015 1829 aaPredicted RBP7.84□□□□□ -1.15
VPS53-217ENST00000575100 NCAM2O15394 837 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 ATP5JP18859 108 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 CCND1P24385 295 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 CHKAP35790 457 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 MCAMP43121 646 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 GYG1P46976 350 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 GRM1Q13255 1194 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 TLR1Q15399 786 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 VPS53Q5VIR6 699 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 SPATA1Q5VX52 437 aa7.84□□□□□ -1.15
VPS53-217ENST00000575100 TLDC1Q6P9B6 456 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms