RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PLCB4Q15147 1175 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 KNOP1Q1ED39 458 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 DAAM2Q86T65 1068 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 ZC3H3Q8IXZ2 948 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 CNBD1Q8NA66 436 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 TPCN2Q8NHX9 752 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 ACTR5Q9H9F9 607 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 AKR1B1P15121 316 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 SLC9A1P19634 815 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 RHBDL3P58872 404 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 PPP2R5EQ16537 467 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 ARMC9Q7Z3E5 817 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 METTL13Q8N6R0 699 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 GJA10Q969M2 543 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 CCDC114Q96M63 670 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 FGFBP2Q9BYJ0 223 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 DDX47Q9H0S4 455 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 SUCLA2Q9P2R7 463 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 FBXL5Q9UKA1 691 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 AMFRQ9UKV5 643 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 INTUQ9ULD6 942 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 PCDHA2Q9Y5H9 948 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 GOLGA6L10A0A0M3HER8 536 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 MPHOSPH10O00566 681 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 PRKCIP41743 596 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 TRADDQ15628 312 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 IRF2BP2Q7Z5L9 587 aa11.74□□□□□ -0.53
CCDC40-207ENST00000572253 U2AF1L4Q8WU68 220 aaKnown RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 MYCBPQ99417 103 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 NAP1L3Q99457 506 aaPredicted RBP11.74□□□□□ -0.53
CCDC40-207ENST00000572253 ROBO1Q9Y6N7 1651 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 A0A0A6YYK5 440 aaPredicted RBP11.73□□□□□ -0.53
CCDC40-207ENST00000572253 PDXKO00764 312 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 EDIL3O43854 480 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 RAD21O60216 631 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 RFC4P35249 363 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 CLK2P49760 499 aaKnown RBP11.73□□□□□ -0.53
CCDC40-207ENST00000572253 PPP2R2AP63151 447 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 KRT71Q3SY84 523 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 CYFIP2Q96F07 1278 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 RAB17Q9H0T7 212 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 TRAF3IP3Q9Y228 551 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 ATP8B3O60423 1300 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 PON1P27169 355 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 GPSM2P81274 684 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 PTPROQ16827 1216 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 FMNL3Q8IVF7 1028 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 UIMC1Q96RL1 719 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 NCAPGQ9BPX3 1015 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 MYO1FO00160 1098 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 GFPT2O94808 682 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 CCDC172P0C7W6 258 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 SLC16A2P36021 539 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 STAT1P42224 750 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 NPEPPSP55786 919 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 DDX42Q86XP3 938 aaKnown RBP eCLIP11.73□□□□□ -0.53
CCDC40-207ENST00000572253 CACNA2D3Q8IZS8 1091 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 LRRC57Q8N9N7 239 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 ANO3Q9BYT9 981 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 GOLPH3Q9H4A6 298 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 VCPKMTQ9H867 229 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 TYW1Q9NV66 732 aaKnown RBP11.73□□□□□ -0.53
CCDC40-207ENST00000572253 GAKO14976 1311 aa11.73□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L10C9JJH3 530 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 SLC16A3O15427 465 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 HLA-DOAP06340 250 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 IL1R1P14778 569 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 EIF3BP55884 814 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 ACTN3Q08043 901 aaPredicted RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 ZNF844Q08AG5 666 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 HOOK3Q86VS8 718 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 SFR1Q86XK3 245 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 GCNT4Q9P109 453 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 SERPINB13Q9UIV8 391 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 NOVA2Q9UNW9 492 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 DIS3Q9Y2L1 958 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 POTEFA5A3E0 1075 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 POTEIP0CG38 1075 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 DHX9Q08211 1270 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 CLUL1Q15846 466 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 TTBK2Q6IQ55 1244 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 POTEGQ6S5H5 508 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 POTEEQ6S8J3 1075 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 OR2W6PQ8NHA6 318 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 CNOT10Q9H9A5 744 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 AMACRQ9UHK6 382 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 FRMD3A2A2Y4 597 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 DAPK3O43293 454 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 NR3C1P04150 777 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 LMNB1P20700 586 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 FNTAP49354 379 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 PABPC4Q13310 644 aaKnown RBP eCLIP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 PRPF4BQ13523 1007 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 CPLX4Q7Z7G2 160 aa11.72□□□□□ -0.53
CCDC40-207ENST00000572253 GEMIN8Q9NWZ8 242 aaKnown RBP11.72□□□□□ -0.53
CCDC40-207ENST00000572253 COL5A3P25940 1745 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-207ENST00000572253 MED24O75448 989 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 STAT3P40763 770 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 SLC12A3P55017 1021 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 AP3B2Q13367 1082 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms