RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ARHGAP29Q52LW3 1261 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 C4orf17Q53FE4 359 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CCDC92Q53HC0 331 aaPredicted RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 ZNF468Q5VIY5 522 aaPredicted RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 AGAP9Q5VTM2 703 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 FBXW10Q5XX13 1052 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CREB3L3Q68CJ9 461 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 OVCH2Q7RTZ1 564 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CTU1Q7Z7A3 348 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 LRRC47Q8N1G4 583 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 MSL3Q8N5Y2 521 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 DEFB123Q8N688 67 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ELOA3Q8NG57 546 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CNKSR1Q969H4 720 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 TTC17Q96AE7 1141 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 FAXDC2Q96IV6 333 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 SUSD3Q96L08 255 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CRBNQ96SW2 442 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 MYD88Q99836 296 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 FAM167BQ9BTA0 163 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 EPN3Q9H201 632 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 EHD4Q9H223 541 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CRISPLD1Q9H336 500 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 IFT22Q9H7X7 185 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 AGO4Q9HCK5 861 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 ZCCHC17Q9NP64 241 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 TBC1D22BQ9NU19 505 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CACNA2D2Q9NY47 1150 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 PPARGC1AQ9UBK2 798 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 GIT1Q9Y2X7 761 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 STARD13Q9Y3M8 1113 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 PCDHB14Q9Y5E9 798 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 SNCAIPQ9Y6H5 919 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 SCN4AP35499 1836 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CHD6Q8TD26 2715 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 CDC42BPGQ6DT37 1551 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 MBD5Q9P267 1494 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TCRBV16S1A1N1A0A5B0 115 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 ZNF891A8MT65 544 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 METTL12A8MUP2 240 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 NFKBIEO00221 500 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CHL1O00533 1208 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 DDX3YO15523 660 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 TBX1O43435 398 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 KPNA6O60684 536 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TMCC2O75069 709 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 MT-CO1P00395 513 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 ALBP02768 609 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 IFIT1P09914 478 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 MAPTP10636 758 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 HSD3B1P14060 373 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 OAS2P29728 719 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 HOXD12P35452 270 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CHKAP35790 457 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 MAP2K2P36507 400 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CAP2P40123 477 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 RECQLP46063 649 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 CCT5P48643 541 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CENPCQ03188 943 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 ZNF267Q14586 743 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 NCAPHQ15003 741 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SEPT2Q15019 361 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TLR1Q15399 786 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 NTRK3Q16288 839 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SPRED3Q2MJR0 410 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CWF19L2Q2TBE0 894 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 ATAT1Q5SQI0 421 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 LMBRD2Q68DH5 695 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 CDCA2Q69YH5 1023 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 IQCEQ6IPM2 695 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CYP4F22Q6NT55 531 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 MPRIPQ6WCQ1 1025 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 RTL10Q7L3V2 364 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SCUBE1Q8IWY4 988 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CMIPQ8IY22 773 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 AHI1Q8N157 1196 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 STK11IPQ8N1F8 1099 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TCP11L2Q8N4U5 519 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TMEM102Q8N9M5 508 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 NAXEQ8NCW5 288 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 DEPTORQ8TB45 409 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SH3KBP1Q96B97 665 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 LENG1Q96BZ8 264 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 UBXN10Q96LJ8 280 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 LRGUKQ96M69 825 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SLC9A7Q96T83 725 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 NUP88Q99567 741 aaPredicted RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 TM9SF2Q99805 663 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SLX1AQ9BQ83 275 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TTLL2Q9BWV7 592 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CHMP4BQ9H444 224 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 RRN3Q9NYV6 651 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SAP30BPQ9UHR5 308 aaKnown RBP3.55□□□□□ -1.84
VPS35-209ENST00000568642 TPCN1Q9ULQ1 816 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SYNPO2Q9UMS6 1093 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 CEP131Q9UPN4 1083 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 TRAK1Q9UPV9 953 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 POLHQ9Y253 713 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 PCDHGC4Q9Y5F7 938 aa3.55□□□□□ -1.84
VPS35-209ENST00000568642 SCN11AQ9UI33 1791 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms