RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PTPN11Q06124 597 aaPredicted RBP24.43■■□□□ 1.5
SNX1-210ENST00000560260 PDIA5Q14554 519 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 ECM1Q16610 540 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 NEK9Q8TD19 979 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 TRAPPC12Q8WVT3 735 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 ZBTB10Q96DT7 871 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 CLIC6Q96NY7 704 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 SETD4Q9NVD3 440 aa24.43■■□□□ 1.5
SNX1-210ENST00000560260 TNRC18O15417 2968 aaPredicted RBP24.43■■□□□ 1.5
SNX1-210ENST00000560260 TRIP12Q14669 1992 aaPredicted RBP24.43■■□□□ 1.5
SNX1-210ENST00000560260 ZBTB42B2RXF5 422 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 CD4P01730 458 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 ADAM17P78536 824 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 PPFIA1Q13136 1202 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 GRIK4Q16099 956 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 ATL3Q6DD88 541 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 CATSPER3Q86XQ3 398 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 CKAP2LQ8IYA6 745 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 HTATIP2Q9BUP3 242 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 SRPRBQ9Y5M8 271 aaKnown RBP24.42■■□□□ 1.5
SNX1-210ENST00000560260 TCHHQ07283 1943 aa24.42■■□□□ 1.5
SNX1-210ENST00000560260 C17orf102A2RUQ5 167 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 ZBTB39O15060 712 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 SPTLC2O15270 562 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 FAAP100Q0VG06 881 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 MARCH8Q5T0T0 291 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 TPH2Q8IWU9 490 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 C4orf19Q8IY42 314 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 SNX29Q8TEQ0 813 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 BBXQ8WY36 941 aaPredicted RBP24.41■■□□□ 1.5
SNX1-210ENST00000560260 TOX2Q96NM4 488 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 POLR3CQ9BUI4 534 aaPredicted RBP24.41■■□□□ 1.5
SNX1-210ENST00000560260 SEZ6LQ9BYH1 1024 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 CSRNP2Q9H175 543 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 CHMP5Q9NZZ3 219 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 ARID2Q68CP9 1835 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 MROH7Q68CQ1 1323 aa24.41■■□□□ 1.5
SNX1-210ENST00000560260 A0A087WWV3 80 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 HBP1O60381 514 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 RPA1P27694 616 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 IGBP1P78318 339 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 SPECC1Q5M775 1068 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 PLA2G4FQ68DD2 849 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 POTEGQ6S5H5 508 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 ANO5Q75V66 913 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 C7orf61Q8IZ16 206 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 WNT8BQ93098 351 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 FAM167AQ96KS9 214 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 SH2D3AQ9BRG2 576 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 RAB34Q9BZG1 259 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 ZSWIM4Q9H7M6 989 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 TUFT1Q9NNX1 390 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 PDLIM7Q9NR12 457 aa24.4■■□□□ 1.5
SNX1-210ENST00000560260 SEPT9Q9UHD8 586 aaPredicted RBP24.4■■□□□ 1.5
SNX1-210ENST00000560260 TREHO43280 583 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 PPP6R2O75170 966 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 LYPLA2O95372 231 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 LONP1P36776 959 aaKnown RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 CCT6AP40227 531 aaKnown RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 KRT85P78386 507 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 TARBP2Q15633 366 aaKnown RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 PTGISQ16647 500 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 XKR3Q5GH77 459 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 USP49Q70CQ1 688 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 SH3RF1Q7Z6J0 888 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 KRI1Q8N9T8 703 aaKnown RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 ERMNQ8TAM6 284 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 LEO1Q8WVC0 666 aaPredicted RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 DHX38Q92620 1227 aaKnown RBP24.39■■□□□ 1.5
SNX1-210ENST00000560260 CEP89Q96ST8 783 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 RCOR1Q9UKL0 485 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 ATP6V1DQ9Y5K8 247 aa24.39■■□□□ 1.5
SNX1-210ENST00000560260 NRCAMQ92823 1304 aa24.39■■□□□ 1.49
SNX1-210ENST00000560260 CYP2C9P11712 490 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 NCLP19338 710 aaKnown RBP24.38■■□□□ 1.49
SNX1-210ENST00000560260 HAUS3Q68CZ6 603 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 ZNF579Q8NAF0 562 aaKnown RBP24.38■■□□□ 1.49
SNX1-210ENST00000560260 PNMA5Q96PV4 448 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 CFAP45Q9UL16 551 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 TBX21Q9UL17 535 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 COL1A2P08123 1366 aa24.38■■□□□ 1.49
SNX1-210ENST00000560260 MBLAC1A4D2B0 266 aaPredicted RBP24.37■■□□□ 1.49
SNX1-210ENST00000560260 DDX11L8A8MPP1 907 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 NPEPPSP55786 919 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 MTERF2Q49AM1 385 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 ZNF484Q5JVG2 852 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 AXDND1Q5T1B0 1012 aaPredicted RBP24.37■■□□□ 1.49
SNX1-210ENST00000560260 KRT79Q5XKE5 535 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 RUFY4Q6ZNE9 571 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 KAT6AQ92794 2004 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 EPSTI1Q96J88 318 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 AK8Q96MA6 479 aa24.37■■□□□ 1.49
SNX1-210ENST00000560260 NIFKQ9BYG3 293 aaKnown RBP24.37■■□□□ 1.49
SNX1-210ENST00000560260 DCDC2CA8MYV0 355 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 RBAK-RBAKDNI3L0D1 243 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 TLR3O15455 904 aaKnown RBP24.36■■□□□ 1.49
SNX1-210ENST00000560260 DKC1O60832 514 aaKnown RBP eCLIP24.36■■□□□ 1.49
SNX1-210ENST00000560260 C22orf31O95567 290 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 CLTBP09497 229 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 YWHABP31946 246 aaKnown RBP24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms