RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 PRRC2BQ5JSZ5 2229 aaKnown RBP8.7□□□□□ -1.02
SPG11-205ENST00000558080 CDC45O75419 566 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 GGPS1O95749 300 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 ZNF286BP0CG31 522 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 ANP32AP39687 249 aaKnown RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 LIFRP42702 1097 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 GNAQP50148 359 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 SP2Q02086 613 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 LAMC2Q13753 1193 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 DGKDQ16760 1214 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 C8orf34Q49A92 452 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 INTS6LQ5JSJ4 861 aaKnown RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 RASIP1Q5U651 963 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 RNF20Q5VTR2 975 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 ZNF385CQ66K41 422 aaPredicted RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 NFRKBQ6P4R8 1299 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 USP17L6PQ6QN14 398 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 RPUSD2Q8IZ73 545 aaKnown RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 RETREG2Q8NC44 543 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 SMARCC2Q8TAQ2 1214 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 MYLIPQ8WY64 445 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 HERVK_113Q902F9 699 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 KAT2BQ92831 832 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 TCEANC2Q96MN5 208 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 LZTS2Q9BRK4 669 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 SPZ1Q9BXG8 430 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 BCAS3Q9H6U6 928 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 SLC24A3Q9HC58 644 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 CXXC1Q9P0U4 656 aaPredicted RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 SEC63Q9UGP8 760 aaKnown RBP8.69□□□□□ -1.02
SPG11-205ENST00000558080 NOD1Q9Y239 953 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 SLC12A7Q9Y666 1083 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 BRWD1Q9NSI6 2320 aa8.69□□□□□ -1.02
SPG11-205ENST00000558080 ZBBXA8MT70 800 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CALM1P0DP23 149 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CALM2P0DP24 149 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CALM3P0DP25 149 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 SMARCA1P28370 1054 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CTSOP43234 321 aaPredicted RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 PTPN11Q06124 597 aaPredicted RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 PTGISQ16647 500 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 ADCK5Q3MIX3 580 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CELF3Q5SZQ8 465 aaKnown RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 GDF6Q6KF10 455 aaPredicted RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 KCNV1Q6PIU1 500 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 SYNE3Q6ZMZ3 975 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 ZBTB33Q86T24 672 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 MICU3Q86XE3 530 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 FANCBQ8NB91 859 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 PPTC7Q8NI37 304 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 LRRN4Q8WUT4 740 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 CUL5Q93034 780 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 TIFAQ96CG3 184 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 VWCEQ96DN2 955 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 SPATA33Q96N06 139 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 NEK1Q96PY6 1258 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 OCSTAMPQ9BR26 566 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 MTIF3Q9H2K0 278 aaKnown RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 RTEL1Q9NZ71 1219 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 HDAC6Q9UBN7 1215 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 GPSM3Q9Y4H4 160 aa8.68□□□□□ -1.02
SPG11-205ENST00000558080 TCF20Q9UGU0 1960 aaKnown RBP8.68□□□□□ -1.02
SPG11-205ENST00000558080 CHD9Q3L8U1 2897 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 RBAK-RBAKDNI3L0D1 243 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 MEIS2O14770 477 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 IQCF3P0C7M6 154 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 SIP14410 1827 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 UBA1P22314 1058 aaKnown RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 MRPS9P82933 396 aaKnown RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 ZNF200P98182 395 aaPredicted RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 EXOSC10Q01780 885 aaKnown RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 GRIN2CQ14957 1233 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 KIAA0753Q2KHM9 967 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 HSDL1Q3SXM5 330 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 TMTC3Q6ZXV5 915 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 DHX32Q7L7V1 743 aaKnown RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 NLRC5Q86WI3 1866 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 C7orf31Q8N865 590 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 TTC28Q96AY4 2481 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 PBX4Q9BYU1 374 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 FTOQ9C0B1 505 aaKnown RBP eCLIP8.67□□□□□ -1.02
SPG11-205ENST00000558080 ZNF576Q9H609 170 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 PSTPIP2Q9H939 334 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 MLXIPQ9HAP2 919 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 MSRAQ9UJ68 235 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 BRPF3Q9ULD4 1205 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 NAP1L2Q9ULW6 460 aaPredicted RBP8.67□□□□□ -1.02
SPG11-205ENST00000558080 SLC4A7Q9Y6M7 1214 aa8.67□□□□□ -1.02
SPG11-205ENST00000558080 MYO7AQ13402 2215 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 FRMPD4Q14CM0 1322 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 TMEM265A0A087WTH1 108 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 SPATA31C2B4DYI2 1134 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 HAS3O00219 553 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 PPFIA4O75335 1185 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 TGFB3P10600 412 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 CPA1P15085 419 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 FOSL2P15408 326 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 RABGGTBP53611 331 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 RELBQ01201 579 aa8.66□□□□□ -1.02
SPG11-205ENST00000558080 SP4Q02446 784 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms