RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FBXL5Q9UKA1 691 aa23.3■■□□□ 1.32
VPS28-205ENST00000526204 COL2A1P02458 1487 aaPredicted RBP23.3■■□□□ 1.32
VPS28-205ENST00000526204 COL11A2P13942 1736 aaPredicted RBP23.3■■□□□ 1.32
VPS28-205ENST00000526204 ATAD5Q96QE3 1844 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 GOLGA6BA6NDN3 693 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 H0YIN7 160 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 PLSCR1O15162 318 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 MYBP10242 640 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 EZH2Q15910 746 aaKnown RBP23.29■■□□□ 1.32
VPS28-205ENST00000526204 MEI1Q5TIA1 1274 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 GDAP1L1Q96MZ0 367 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 TDRD3Q9H7E2 651 aaKnown RBP23.29■■□□□ 1.32
VPS28-205ENST00000526204 PRR12Q9ULL5 1215 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 NR3C1P04150 777 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 IVLP07476 585 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 EPB41P11171 864 aaKnown RBP23.29■■□□□ 1.32
VPS28-205ENST00000526204 HOXA13P31271 388 aaPredicted RBP23.29■■□□□ 1.32
VPS28-205ENST00000526204 GGCXP38435 758 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 CC2D2BQ6DHV5 1058 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 DPY19L2P1Q6NXN4 242 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 IRF2BP2Q7Z5L9 587 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 TUFT1Q9NNX1 390 aa23.29■■□□□ 1.32
VPS28-205ENST00000526204 AKAP3O75969 853 aa23.28■■□□□ 1.32
VPS28-205ENST00000526204 PON1P27169 355 aa23.28■■□□□ 1.32
VPS28-205ENST00000526204 CYP4A11Q02928 519 aa23.28■■□□□ 1.32
VPS28-205ENST00000526204 ZBTB9Q96C00 473 aa23.28■■□□□ 1.32
VPS28-205ENST00000526204 RBM12Q9NTZ6 932 aaKnown RBP23.28■■□□□ 1.32
VPS28-205ENST00000526204 GCNT3O95395 438 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 SLC9A1P19634 815 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 STAT2P52630 851 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 SLC15A2Q16348 729 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 IFI16Q16666 785 aaKnown RBP23.27■■□□□ 1.32
VPS28-205ENST00000526204 GBP6Q6ZN66 633 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 SND1Q7KZF4 910 aaKnown RBP eCLIP23.27■■□□□ 1.32
VPS28-205ENST00000526204 CSRNP1Q96S65 589 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 RUSC1Q9BVN2 902 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 HERC5Q9UII4 1024 aaKnown RBP23.27■■□□□ 1.32
VPS28-205ENST00000526204 IGLV3-22A0A075B6J6 115 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 GTPBP10A4D1E9 387 aaKnown RBP23.27■■□□□ 1.32
VPS28-205ENST00000526204 AGPSO00116 658 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 CES2O00748 559 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 EIF3DO15371 548 aaKnown RBP eCLIP23.27■■□□□ 1.32
VPS28-205ENST00000526204 ACTN1P12814 892 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 PTK2Q05397 1052 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 CYP2W1Q8TAV3 490 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 HSD17B14Q9BPX1 270 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 ARHGEF10LQ9HCE6 1279 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 SMARCAL1Q9NZC9 954 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 EHD2Q9NZN4 543 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 ASTN1O14525 1302 aa23.27■■□□□ 1.32
VPS28-205ENST00000526204 A0A1W2PRG0 241 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 PRKCIP41743 596 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 JAG1P78504 1218 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 SLC7A5Q01650 507 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 NNTQ13423 1086 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 EPHA7Q15375 998 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 RINT1Q6NUQ1 792 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 IFT20Q8IY31 132 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 CAVIN3Q969G5 261 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 ATP8B3O60423 1300 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 RSPH10B2B2RC85 870 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 EML1O00423 815 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 FTCDO95954 541 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 RSPH10BP0C881 870 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 ENOX2Q16206 610 aaKnown RBP23.26■■□□□ 1.31
VPS28-205ENST00000526204 DCAF17Q5H9S7 520 aaPredicted RBP23.26■■□□□ 1.31
VPS28-205ENST00000526204 MS4A14Q96JA4 679 aa23.26■■□□□ 1.31
VPS28-205ENST00000526204 MUTP22033 750 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 NFIL3Q16649 462 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 ALS2CLQ60I27 953 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 OTOP1Q7RTM1 612 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 ZNF571Q7Z3V5 609 aaPredicted RBP23.25■■□□□ 1.31
VPS28-205ENST00000526204 SLC35C1Q96A29 364 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 RGL1Q9NZL6 768 aa23.25■■□□□ 1.31
VPS28-205ENST00000526204 FLOT1O75955 427 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 PPP2R5CQ13362 524 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 TCERG1LQ5VWI1 586 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 VPS36Q86VN1 386 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 SPICE1Q8N0Z3 855 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 PACSIN1Q9BY11 444 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 EHMT1Q9H9B1 1298 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS28-205ENST00000526204 MYH10P35580 1976 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 PPP1R12BO60237 982 aaPredicted RBP23.24■■□□□ 1.31
VPS28-205ENST00000526204 CLSTN1O94985 981 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 FAM13AO94988 1023 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 AOC3Q16853 763 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 LRCH2Q5VUJ6 765 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 TAF4BQ92750 862 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 CNKSR1Q969H4 720 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 PRMT6Q96LA8 375 aaPredicted RBP23.24■■□□□ 1.31
VPS28-205ENST00000526204 GOPCQ9HD26 462 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 SEL1LQ9UBV2 794 aa23.24■■□□□ 1.31
VPS28-205ENST00000526204 OPA1O60313 960 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 PSMD10O75832 226 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 RIN2Q8WYP3 895 aaPredicted RBP23.23■■□□□ 1.31
VPS28-205ENST00000526204 INPP4AQ96PE3 977 aaPredicted RBP23.23■■□□□ 1.31
VPS28-205ENST00000526204 TMOD2Q9NZR1 351 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 NAGPAQ9UK23 515 aa23.23■■□□□ 1.31
VPS28-205ENST00000526204 TMX2Q9Y320 296 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms