RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ATP8B4Q8TF62 1192 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 DDX12PQ92771 950 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 NSUN4Q96CB9 384 aaKnown RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 STAMBPL1Q96FJ0 436 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 HES6Q96HZ4 224 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 AP1M1Q9BXS5 423 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 STMN4Q9H169 189 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 PABPC3Q9H361 631 aaKnown RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 IL17RBQ9NRM6 502 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 HOMER3Q9NSC5 361 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 AMACRQ9UHK6 382 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 CNOT7Q9UIV1 285 aaKnown RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 NAGPAQ9UK23 515 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 MYH4Q9Y623 1939 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 PHLPP1O60346 1717 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 TRAF5O00463 557 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 TTI1O43156 1089 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CAND2O75155 1236 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 GFPT2O94808 682 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ANP32DO95626 131 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CCND1P24385 295 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CCNG1P51959 295 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PTENP60484 403 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PTK2Q05397 1052 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 COASYQ13057 564 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CAVIN4Q5BKX8 364 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 BTNL9Q6UXG8 535 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PEX26Q7Z412 305 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ARMC2Q8NEN0 867 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 NEK9Q8TD19 979 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CNKSR1Q969H4 720 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 SPAG5Q96R06 1193 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 NAP1L3Q99457 506 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ADAM7Q9H2U9 754 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 EPB41L4BQ9H329 900 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PNMA2Q9UL42 364 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 TRPC6Q9Y210 931 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 hCG_1984214I3L0E3 225 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 BACH1O14867 736 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 SLC26A4O43511 780 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PPP1R12BO60237 982 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ATP2C2O75185 946 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 OAS1P00973 400 aaKnown RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 RPSAP08865 295 aaKnown RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 NQO1P15559 274 aaKnown RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 NAPAP54920 295 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 TFAP4Q01664 338 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ADCY2Q08462 1091 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 MYO1EQ12965 1108 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 MKRN4PQ13434 485 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CALCRLQ16602 461 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 EDRF1Q3B7T1 1238 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 TNFAIP8L3Q5GJ75 292 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 FAM26FQ5R3K3 315 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 C6orf118Q5T5N4 469 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 DUPD1Q68J44 220 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 CDCA2Q69YH5 1023 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ALKBH5Q6P6C2 394 aaKnown RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 BZW1Q7L1Q6 419 aaKnown RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 DYMQ7RTS9 669 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ZNF571Q7Z3V5 609 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 NT5DC3Q86UY8 548 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 GPIHBP1Q8IV16 184 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ZNF713Q8N859 430 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 DNAJC19Q96DA6 116 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ACSBG1Q96GR2 724 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PLCD4Q9BRC7 762 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 PRDM11Q9NQV5 511 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ZDHHC18Q9NUE0 388 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE1-230ENST00000495090 ITGB4P16144 1822 aa10.54□□□□□ -0.72
SYNE1-230ENST00000495090 SMCO2A6NFE2 343 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 GYG1P46976 350 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 PDE6CP51160 858 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 DHX34Q14147 1143 aaKnown RBP10.53□□□□□ -0.72
SYNE1-230ENST00000495090 GALNTL6Q49A17 601 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 KRT79Q5XKE5 535 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 DENND2CQ68D51 928 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 DPY19L2P1Q6NXN4 242 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 VPS36Q86VN1 386 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 MDM1Q8TC05 714 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 TBCKQ8TEA7 893 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 TCP11Q8WWU5 503 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 TBC1D31Q96DN5 1066 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 INTS9Q9NV88 658 aaKnown RBP10.53□□□□□ -0.72
SYNE1-230ENST00000495090 ATP8A1Q9Y2Q0 1164 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 BCL9O00512 1426 aa10.53□□□□□ -0.72
SYNE1-230ENST00000495090 O00370 1275 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 SNX3O60493 162 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 LUC7L3O95232 432 aaKnown RBP10.52□□□□□ -0.72
SYNE1-230ENST00000495090 CLTAP09496 248 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 H2AFZP0C0S5 128 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 CYP2D6P10635 497 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 ITGA4P13612 1032 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 EPS15P42566 896 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 TXKP42681 527 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 PMS2P54278 862 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 MECOMQ03112 1051 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 EVX2Q03828 476 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms