RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 VTA1Q9NP79 307 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 A1CFQ9NQ94 594 aaKnown RBP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 FAM86C1Q9NVL1 165 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 PAG1Q9NWQ8 432 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 PCDHA7Q9UN72 937 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 E7EWF7 191 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 F5H6K3 240 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 FDX1P10109 184 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 CPT1AP50416 773 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 HTRA4P83105 476 aaPredicted RBP11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 KLRC3Q07444 240 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 IMMTQ16891 758 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 TCEAL5Q5H9L2 206 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 C12orf60Q5U649 245 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 MYSM1Q5VVJ2 828 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 GPR161Q8N6U8 529 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 TRIML1Q8N9V2 468 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 MNS1Q8NEH6 495 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 PPP1R13LQ8WUF5 828 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 MARVELD3Q96A59 401 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 CCDC34Q96HJ3 373 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 C8orf76Q96K31 380 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 SAMD11Q96NU1 681 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 XPO4Q9C0E2 1151 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 NSUN3Q9H649 340 aaKnown RBP11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 ACAD9Q9H845 621 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 PSD3Q9NYI0 1048 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 INSL6Q9Y581 213 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 NID2Q14112 1375 aa11.9□□□□□ -0.5
PDLIM1-205ENST00000493949 ZMYM6O95789 1325 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 NEDD4P46934 1319 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 STK36Q9NRP7 1315 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 CACNA1GO43497 2377 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 USP27XA6NNY8 438 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 H3BNC9 293 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 GOLIM4O00461 696 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 RNF113AO15541 343 aaKnown RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 MBTPS2O43462 519 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 STX10O60499 249 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 MBD4O95243 580 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 SMC2O95347 1197 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 NDUFB10O96000 172 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 ZXDAP98168 799 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 ASCL5Q7RTU5 278 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 TMC6Q7Z403 805 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 FBXO16Q8IX29 292 aaPredicted RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 CCDC155Q8N6L0 562 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 ATOH1Q92858 354 aaPredicted RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 DNAJC2Q99543 621 aaKnown RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 NAA15Q9BXJ9 866 aaKnown RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 ATP8A2Q9NTI2 1148 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 IFNKQ9P0W0 207 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 NYAP2Q9P242 653 aa11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 ORC3Q9UBD5 711 aaPredicted RBP11.89□□□□□ -0.51
PDLIM1-205ENST00000493949 RBM47A0AV96 593 aaKnown RBP11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 KPNA6O60684 536 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 CUTAO60888 179 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 TADA3O75528 432 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 ZNF202O95125 648 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 PNMA6AP0CW24 399 aaPredicted RBP11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 HSPD1P10809 573 aaKnown RBP11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 SELPP16109 830 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 ID4P47928 161 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 FANCCQ00597 558 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 NCAPHQ15003 741 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 SLC39A14Q15043 492 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 TCTN1Q2MV58 587 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 EPC2Q52LR7 807 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 FAM47CQ5HY64 1035 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 KANK3Q6NY19 840 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 ARMCX5Q6P1M9 558 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 STOX1Q6ZVD7 989 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 RPAINQ86UA6 219 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 VSTM4Q8IW00 320 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 RABGGTAQ92696 567 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 TCEANC2Q96MN5 208 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 CTAGE1Q96RT6 745 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 MTA3Q9BTC8 594 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 UBXN6Q9BZV1 441 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 CLDND1Q9NY35 253 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 CWC15Q9P013 229 aaKnown RBP11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 FEM1BQ9UK73 627 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 PCDHB8Q9UN66 801 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 HPSEQ9Y251 543 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 CTDP1Q9Y5B0 961 aaPredicted RBP11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 FHOD1Q9Y613 1164 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 TAF6LQ9Y6J9 622 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 FRYLO94915 3013 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 NCOR2Q9Y618 2525 aa11.88□□□□□ -0.51
PDLIM1-205ENST00000493949 LOC102724159A0A0B4J2E5 919 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 PRR23AA6NEV1 266 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 TULP2O00295 520 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 NBNO60934 754 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 MYL3P08590 195 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 AVPR2P30518 371 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 NDUFA8P51970 172 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 APOBRQ0VD83 1088 aa11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 SMAD4Q13485 552 aaKnown RBP11.87□□□□□ -0.51
PDLIM1-205ENST00000493949 BRD3Q15059 726 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms