RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 DEFB128Q7Z7B8 93 aa20.31■□□□□ 0.84
HDAC6-225ENST00000483506 POTEDQ86YR6 584 aa20.31■□□□□ 0.84
HDAC6-225ENST00000483506 BBXQ8WY36 941 aaPredicted RBP20.31■□□□□ 0.84
HDAC6-225ENST00000483506 MTIF3Q9H2K0 278 aaKnown RBP20.31■□□□□ 0.84
HDAC6-225ENST00000483506 GABBR1Q9UBS5 961 aa20.31■□□□□ 0.84
HDAC6-225ENST00000483506 SAMM50Q9Y512 469 aa20.31■□□□□ 0.84
HDAC6-225ENST00000483506 RSPH10B2B2RC85 870 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 ZBTB42B2RXF5 422 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 WNT7AO00755 349 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 RSPH10BP0C881 870 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 U2AF2P26368 475 aaKnown RBP eCLIP20.3■□□□□ 0.84
HDAC6-225ENST00000483506 CUL4AQ13619 759 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 ZNF484Q5JVG2 852 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 FAM167AQ96KS9 214 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 CXXC1Q9P0U4 656 aaPredicted RBP20.3■□□□□ 0.84
HDAC6-225ENST00000483506 PCDHA2Q9Y5H9 948 aa20.3■□□□□ 0.84
HDAC6-225ENST00000483506 CHMP2AO43633 222 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 ZNF862O60290 1169 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 ORC2Q13416 577 aaPredicted RBP20.29■□□□□ 0.84
HDAC6-225ENST00000483506 OTOP2Q7RTS6 562 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 MIER3Q7Z3K6 550 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 NOSTRINQ8IVI9 506 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 SLFN12Q8IYM2 578 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.29■□□□□ 0.84
HDAC6-225ENST00000483506 SIP14410 1827 aa20.29■□□□□ 0.84
HDAC6-225ENST00000483506 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.28■□□□□ 0.84
HDAC6-225ENST00000483506 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.28■□□□□ 0.84
HDAC6-225ENST00000483506 BAIAP3O94812 1187 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 ACTN1P12814 892 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 GJB2P29033 226 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 TRAPPC10P48553 1259 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 IGBP1P78318 339 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 SPIRE1Q08AE8 756 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 MGAT3Q09327 533 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 UGCGQ16739 394 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 MTHFD1LQ6UB35 978 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 TRAPPC12Q8WVT3 735 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 CEP131Q9UPN4 1083 aa20.28■□□□□ 0.84
HDAC6-225ENST00000483506 SMIM35A0A1B0GVV1 85 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 KIF28PB7ZC32 967 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 NEMFO60524 1076 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 BAG4O95429 457 aaKnown RBP20.27■□□□□ 0.84
HDAC6-225ENST00000483506 OATP04181 439 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 PRKCEQ02156 737 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 FAM109BQ6ICB4 259 aaPredicted RBP20.27■□□□□ 0.84
HDAC6-225ENST00000483506 CNKSR3Q6P9H4 555 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 RSPH3Q86UC2 560 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 MTMR9Q96QG7 549 aa20.27■□□□□ 0.84
HDAC6-225ENST00000483506 FTOQ9C0B1 505 aaKnown RBP eCLIP20.27■□□□□ 0.84
HDAC6-225ENST00000483506 EML1O00423 815 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 CALCRLQ16602 461 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 CKAP2LQ8IYA6 745 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 DNAJB3Q8WWF6 145 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 ZBTB10Q96DT7 871 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 SMC3Q9UQE7 1217 aa20.26■□□□□ 0.83
HDAC6-225ENST00000483506 STBD1O95210 358 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 C22orf31O95567 290 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 CHRNA1P02708 482 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 CTSHP09668 335 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 KLRC1P26715 233 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 MKRN4PQ13434 485 aaPredicted RBP20.25■□□□□ 0.83
HDAC6-225ENST00000483506 PLEKHG4Q58EX7 1191 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 NME8Q8N427 588 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 NIFKQ9BYG3 293 aaKnown RBP20.25■□□□□ 0.83
HDAC6-225ENST00000483506 NRBP2Q9NSY0 501 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 SLC4A7Q9Y6M7 1214 aa20.25■□□□□ 0.83
HDAC6-225ENST00000483506 MICAL3Q7RTP6 2002 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 ABHD14A-ACY1A0A1B0GW23 586 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 EFCAB14O75071 495 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 SLC34A2O95436 690 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 PSMC5P62195 406 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 MRPS6P82932 125 aaKnown RBP20.24■□□□□ 0.83
HDAC6-225ENST00000483506 GNL2Q13823 731 aaKnown RBP20.24■□□□□ 0.83
HDAC6-225ENST00000483506 EPHA7Q15375 998 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 TARBP2Q15633 366 aaKnown RBP20.24■□□□□ 0.83
HDAC6-225ENST00000483506 TCTN1Q2MV58 587 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 XKR3Q5GH77 459 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 LINC01465Q8N7H1 131 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 PHOSPHO2Q8TCD6 241 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 TMEM60Q9H2L4 133 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 SQORQ9Y6N5 450 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 KDM3AQ9Y4C1 1321 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 EVPLQ92817 2033 aa20.24■□□□□ 0.83
HDAC6-225ENST00000483506 PTPRSQ13332 1948 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 TMEM265A0A087WTH1 108 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 MAGEB2O15479 319 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 MARCH6O60337 910 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 P4HBP07237 508 aaKnown RBP20.23■□□□□ 0.83
HDAC6-225ENST00000483506 IER5Q5VY09 327 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 KIAA0319LQ8IZA0 1049 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 GBF1Q92538 1859 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 SNX21Q969T3 373 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 CEP89Q96ST8 783 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 SLC9A7Q96T83 725 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 OSBPL7Q9BZF2 842 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 FAM49AQ9H0Q0 323 aaPredicted RBP20.23■□□□□ 0.83
HDAC6-225ENST00000483506 NOL7Q9UMY1 257 aaKnown RBP20.23■□□□□ 0.83
HDAC6-225ENST00000483506 PCDHA12Q9UN75 941 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 CDY2AQ9Y6F7 541 aa20.23■□□□□ 0.83
HDAC6-225ENST00000483506 ZBBXA8MT70 800 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms