RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CLIC4Q9Y696 253 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 SPDYE4A6NLX3 237 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 TREHO43280 583 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 DKC1O60832 514 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS13D-204ENST00000469054 SLITRK3O94933 977 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 OATP04181 439 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 SYN1P17600 705 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 IGBP1P78318 339 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 PRKCEQ02156 737 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 PTK7Q13308 1070 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 PDIA5Q14554 519 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 IL17AQ16552 155 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 XKR3Q5GH77 459 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 ZNF484Q5JVG2 852 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 ARL6IP4Q66PJ3 421 aaKnown RBP13.41□□□□□ -0.26
VPS13D-204ENST00000469054 C4orf19Q8IY42 314 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 NEK9Q8TD19 979 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 DYDC2Q96IM9 177 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 USP28Q96RU2 1077 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 LXNQ9BS40 222 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 RAB34Q9BZG1 259 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 FTOQ9C0B1 505 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS13D-204ENST00000469054 ZSWIM4Q9H7M6 989 aa13.41□□□□□ -0.26
VPS13D-204ENST00000469054 DOCK5Q9H7D0 1870 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 MBLAC1A4D2B0 266 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 H0YGN5 161 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 STBD1O95210 358 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 TIMP1P01033 207 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 RAG1P15918 1043 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 ITGB8P26012 769 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 CYP4A11Q02928 519 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 BFSP2Q13515 415 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 CTTNQ14247 550 aaKnown RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 PTPAQ15257 358 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 MARCH8Q5T0T0 291 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 SERINC5Q86VE9 423 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 TPH2Q8IWU9 490 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 IGSF22Q8N9C0 903 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 ERMNQ8TAM6 284 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 CAGE1Q8TC20 777 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 ZNF396Q96N95 335 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 NOC4LQ9BVI4 516 aaKnown RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 NIFKQ9BYG3 293 aaKnown RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 HIPK3Q9H422 1215 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 WRAP73Q9P2S5 460 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 DAXXQ9UER7 740 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-204ENST00000469054 LRWD1Q9UFC0 647 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 TUBE1Q9UJT0 475 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 ZDHHC9Q9Y397 364 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 STK24Q9Y6E0 443 aa13.4□□□□□ -0.26
VPS13D-204ENST00000469054 VWA3AA6NCI4 1184 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 DDX11L8A8MPP1 907 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 ZBTB42B2RXF5 422 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 LYPLA2O95372 231 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 SPATA31C1P0DKV0 1188 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 CEBPZQ03701 1054 aaKnown RBP13.39□□□□□ -0.27
VPS13D-204ENST00000469054 TAF2Q6P1X5 1199 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 CATSPER3Q86XQ3 398 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 TRAPPC12Q8WVT3 735 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 DHX38Q92620 1227 aaKnown RBP13.39□□□□□ -0.27
VPS13D-204ENST00000469054 POLR3CQ9BUI4 534 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-204ENST00000469054 PPP1R12CQ9BZL4 782 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 TUFT1Q9NNX1 390 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 PCDH10Q9P2E7 1040 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-204ENST00000469054 COL1A2P08123 1366 aa13.39□□□□□ -0.27
VPS13D-204ENST00000469054 MED24O75448 989 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 KLRC1P26715 233 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 RPA1P27694 616 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 YWHABP31946 246 aaKnown RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 CYP2C18P33260 490 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 DDIT3P35638 169 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 NASPP49321 788 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 NUCB2P80303 420 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 RBL2Q08999 1139 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 SLC39A14Q15043 492 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 TARBP2Q15633 366 aaKnown RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 FOXD4L6Q3SYB3 417 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 KRT79Q5XKE5 535 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 HAUS3Q68CZ6 603 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 ATL3Q6DD88 541 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 MTHFD1LQ6UB35 978 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 FOXD4L3Q6VB84 417 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 ANO5Q75V66 913 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 OTUD6AQ7L8S5 288 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 CCDC155Q8N6L0 562 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 RETREG2Q8NC44 543 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 BADQ92934 168 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 WNT8BQ93098 351 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 LBHD1Q9BQE6 289 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 TFIP11Q9UBB9 837 aaKnown RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 PCDHA2Q9Y5H9 948 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 MORC2Q9Y6X9 1032 aaPredicted RBP13.38□□□□□ -0.27
VPS13D-204ENST00000469054 UMODL1Q5DID0 1318 aa13.38□□□□□ -0.27
VPS13D-204ENST00000469054 TMEM150BA6NC51 233 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 PP2D1A8MPX8 630 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 PITPNM1O00562 1244 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 ZBTB39O15060 712 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 MAGEB2O15479 319 aa13.37□□□□□ -0.27
VPS13D-204ENST00000469054 CKBP12277 381 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms