RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SLFN12Q8IYM2 578 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 RDM1Q8NG50 284 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 ATP8B4Q8TF62 1192 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 FAM20AQ96MK3 541 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.92□□□□□ -0.34
COL28A1-203ENST00000435823 MTIF3Q9H2K0 278 aaKnown RBP12.92□□□□□ -0.34
COL28A1-203ENST00000435823 GABBR1Q9UBS5 961 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 TUBE1Q9UJT0 475 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 TRIP12Q14669 1992 aaPredicted RBP12.92□□□□□ -0.34
COL28A1-203ENST00000435823 HBP1O60381 514 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 ACTN1P12814 892 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 INSRRP14616 1297 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 ADAM17P78536 824 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 TRIM71Q2Q1W2 868 aaKnown RBP12.91□□□□□ -0.34
COL28A1-203ENST00000435823 TMEM240Q5SV17 173 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 ZNF365Q70YC5 407 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 RSPH3Q86UC2 560 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 WNT8BQ93098 351 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 GJA10Q969M2 543 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 FAM167AQ96KS9 214 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 FTOQ9C0B1 505 aaKnown RBP eCLIP12.91□□□□□ -0.34
COL28A1-203ENST00000435823 UNC45AQ9H3U1 944 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 KCNMB3Q9NPA1 279 aa12.91□□□□□ -0.34
COL28A1-203ENST00000435823 NOL7Q9UMY1 257 aaKnown RBP12.91□□□□□ -0.34
COL28A1-203ENST00000435823 MAFBQ9Y5Q3 323 aaPredicted RBP12.91□□□□□ -0.34
COL28A1-203ENST00000435823 IGSF9BQ9UPX0 1349 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 MBLAC1A4D2B0 266 aaPredicted RBP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 RSPH10B2B2RC85 870 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 H3BQV1 296 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 ATMINO43313 823 aaPredicted RBP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 NEMFO60524 1076 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 RPLP2P05387 115 aaKnown RBP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 RSPH10BP0C881 870 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 ATP2B1P20020 1258 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 FXR1P51114 621 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 CALCRLQ16602 461 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 ZNF484Q5JVG2 852 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 ZNF618Q5T7W0 954 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 C16orf59Q7L2K0 433 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 NOSTRINQ8IVI9 506 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 BBXQ8WY36 941 aaPredicted RBP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 CEP131Q9UPN4 1083 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 MYH9P35579 1960 aaKnown RBP12.9□□□□□ -0.34
COL28A1-203ENST00000435823 COL1A2P08123 1366 aa12.9□□□□□ -0.34
COL28A1-203ENST00000435823 PPP2R5CQ13362 524 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 ORC2Q13416 577 aaPredicted RBP12.89□□□□□ -0.35
COL28A1-203ENST00000435823 MCTP1Q6DN14 999 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 B3GNT9Q6UX72 402 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 HERVK_113Q902F9 699 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 HAS1Q92839 578 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 NRBP2Q9NSY0 501 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 SCN5AQ14524 2016 aa12.89□□□□□ -0.35
COL28A1-203ENST00000435823 ZBBXA8MT70 800 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 DKC1O60832 514 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL28A1-203ENST00000435823 OATP04181 439 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 CTSHP09668 335 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 ATP4AP20648 1035 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 MCM7P33993 719 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 TRAPPC10P48553 1259 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 CUL4AQ13619 759 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 MARCH8Q5T0T0 291 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 NCAPH2Q6IBW4 605 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 TRAF7Q6Q0C0 670 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 MTHFD1LQ6UB35 978 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 RUFY4Q6ZNE9 571 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 OTOP2Q7RTS6 562 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 TRMT1LQ7Z2T5 733 aaKnown RBP12.88□□□□□ -0.35
COL28A1-203ENST00000435823 RPAINQ86UA6 219 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 TRAPPC12Q8WVT3 735 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 VAV3Q9UKW4 847 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 PCDHA2Q9Y5H9 948 aa12.88□□□□□ -0.35
COL28A1-203ENST00000435823 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 SMIM35A0A1B0GVV1 85 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 KIF28PB7ZC32 967 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 K7ELQ4 463 aaPredicted RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 M0QZ92 97 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 SOX1O00570 391 aaPredicted RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 NBNO60934 754 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 BAIAP3O94812 1187 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 CXCL10P02778 98 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 U2AF2P26368 475 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 KLRC1P26715 233 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 PSMC5P62195 406 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 PRKCEQ02156 737 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 UGCGQ16739 394 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 TTC38Q5R3I4 469 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 RASIP1Q5U651 963 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 LARP1BQ659C4 914 aaKnown RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 CNKSR3Q6P9H4 555 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 DNAJB3Q8WWF6 145 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 FAM49AQ9H0Q0 323 aaPredicted RBP12.87□□□□□ -0.35
COL28A1-203ENST00000435823 PCDHA12Q9UN75 941 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 SLC4A7Q9Y6M7 1214 aa12.87□□□□□ -0.35
COL28A1-203ENST00000435823 WDR81Q562E7 1941 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 EML1O00423 815 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 WNT7AO00755 349 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 MAGEB2O15479 319 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 ZNF862O60290 1169 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 PDCP20941 246 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms