RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PFKFB3Q16875 520 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 ZNF569Q5MCW4 686 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 SAMD7Q7Z3H4 446 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 CACNA2D3Q8IZS8 1091 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 IGDCC4Q8TDY8 1250 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 LEO1Q8WVC0 666 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 NR1H4Q96RI1 486 aaPredicted RBP10.67□□□□□ -0.7
USP54-205ENST00000424265 KCND1Q9NSA2 647 aa10.67□□□□□ -0.7
USP54-205ENST00000424265 P4HA2O15460 535 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 KCNJ6P48051 423 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SEPT6Q14141 434 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 CPLX4Q7Z7G2 160 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 USP33Q8TEY7 942 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.66□□□□□ -0.7
USP54-205ENST00000424265 KDM3AQ9Y4C1 1321 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 WNT10BO00744 389 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 TBCAO75347 108 aaKnown RBP10.66□□□□□ -0.7
USP54-205ENST00000424265 HOXA7P31268 230 aaPredicted RBP10.66□□□□□ -0.7
USP54-205ENST00000424265 MCM7P33993 719 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 PDCLQ13371 301 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 STOX1Q6ZVD7 989 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 ARFGAP2Q8N6H7 521 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SLC44A5Q8NCS7 719 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 STAMBPL1Q96FJ0 436 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 CDC23Q9UJX2 597 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 MTMR6Q9Y217 621 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 MMP1P03956 469 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 FKBP1BP68106 108 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 CBX3Q13185 183 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SNAPC2Q13487 334 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 RCN1Q15293 331 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 USH1GQ495M9 461 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SPECC1LQ69YQ0 1117 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 RSRC2Q7L4I2 434 aaKnown RBP10.66□□□□□ -0.7
USP54-205ENST00000424265 USP6NLQ92738 828 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 ATP6V0A1Q93050 837 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 DHRS1Q96LJ7 313 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 LZTFL1Q9NQ48 299 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 HMGB1P1B2RPK0 211 aaPredicted RBP10.66□□□□□ -0.7
USP54-205ENST00000424265 N4BP3O15049 544 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 CDC25CP30307 473 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 FLT3P36888 993 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 CAP2P40123 477 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 RRAGBQ5VZM2 374 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SAPCD2Q86UD0 394 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 GALNT15Q8N3T1 639 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 ANKS1AQ92625 1134 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 HAUS1Q96CS2 278 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 NT5C3AQ9H0P0 336 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 GALNT8Q9NY28 637 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 SCOCQ9UIL1 159 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 L1RE1Q9UN81 338 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 C2CD2Q9Y426 696 aa10.66□□□□□ -0.7
USP54-205ENST00000424265 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.66□□□□□ -0.7
USP54-205ENST00000424265 SLC7A5Q01650 507 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 SUGCTQ9HAC7 445 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 LY75O60449 1722 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 GOLGA8HP0CJ92 632 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 ZNF280AP59817 542 aaPredicted RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 MRPS35P82673 323 aaKnown RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 ZNF543Q08ER8 600 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 ZBTB17Q13105 803 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 KCTD1Q719H9 257 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 ZHX3Q9H4I2 956 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 ZWILCHQ9H900 591 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 MYH3P11055 1940 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 CCNT1O60563 726 aaKnown RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 UBASH3AP57075 661 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 CKAP4Q07065 602 aaKnown RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 MTHFD1LQ6UB35 978 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 GMCL1P1Q8NEA9 526 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 PIGSQ96S52 555 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 XPO4Q9C0E2 1151 aaKnown RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 ATXN10Q9UBB4 475 aa10.65□□□□□ -0.7
USP54-205ENST00000424265 ABT1Q9ULW3 272 aaKnown RBP10.65□□□□□ -0.7
USP54-205ENST00000424265 ZNF202O95125 648 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 ATP6V1G2O95670 118 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 RHBDL3P58872 404 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 CALCRLQ16602 461 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 ARHGEF16Q5VV41 709 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 ANKRD35Q8N283 1001 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 MAGEF1Q9HAY2 307 aa10.65□□□□□ -0.71
USP54-205ENST00000424265 PPANQ9NQ55 473 aaKnown RBP10.65□□□□□ -0.71
USP54-205ENST00000424265 ERO1BQ86YB8 467 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 CERS5Q8N5B7 392 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 TMEM39BQ9GZU3 492 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 COL5A3P25940 1745 aaPredicted RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 GLTPD2A6NH11 291 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 HIP1RO75146 1068 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 CETPP11597 493 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 SPP2Q13103 211 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 INAQ16352 499 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 ADGRA1Q86SQ6 560 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 PPFIBP1Q86W92 1011 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 FUKQ8N0W3 1084 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 C7orf43Q8WVR3 580 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 AK8Q96MA6 479 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 PAGR1Q9BTK6 254 aa10.64□□□□□ -0.71
USP54-205ENST00000424265 POLR3CQ9BUI4 534 aaPredicted RBP10.64□□□□□ -0.71
USP54-205ENST00000424265 DNAI2Q9GZS0 605 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms