RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SNX29Q8TEQ0 813 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 MPP4Q96JB8 637 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 OLFM3Q96PB7 478 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 UBN1Q9NPG3 1134 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 UBN2Q6ZU65 1347 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 MAGEA13PA6NCF6 341 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 EPHB2P29323 1055 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 KCNMA1Q12791 1236 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 THOC5Q13769 683 aaKnown RBP12.69□□□□□ -0.38
PTPN1-201ENST00000371621 BLMHQ13867 455 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CRELD2Q6UXH1 353 aaPredicted RBP12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CCNJLQ8IV13 435 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 FAM129AQ9BZQ8 928 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CYP4F11Q9HBI6 524 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 PPARGC1AQ9UBK2 798 aaKnown RBP12.69□□□□□ -0.38
PTPN1-201ENST00000371621 JAG2Q9Y219 1238 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 SUGT1Q9Y2Z0 365 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 ABCA6Q8N139 1617 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 EXOC1LA0A1B0GW35 172 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 PPP1R3GB7ZBB8 358 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 CCDC188H7C350 402 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 C16orf87Q6PH81 154 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 MKNK1Q9BUB5 465 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 THAP9Q9H5L6 903 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 NPHS2Q9NP85 383 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.69□□□□□ -0.38
PTPN1-201ENST00000371621 FRMD4BQ9Y2L6 1034 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 NEO1Q92859 1461 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 ABCC3O15438 1527 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 LRRC7Q96NW7 1537 aa12.69□□□□□ -0.38
PTPN1-201ENST00000371621 I3L4J1 428 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 HAUS5O94927 633 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 FMNL1O95466 1100 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 FCER1AP12319 257 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 MARK3P27448 753 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 HOXC9P31274 260 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 PGM1P36871 562 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 MMEL1Q495T6 779 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 FAM47AQ5JRC9 791 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 CRACR2BQ8N4Y2 399 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 CCDC110Q8TBZ0 833 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 CAVIN3Q969G5 261 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ISCUQ9H1K1 167 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 TMOD4Q9NZQ9 345 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 PASKQ96RG2 1323 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 A0A1B0GVG6 124 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 TBCAO75347 108 aaKnown RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 GFPT2O94808 682 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ZFXP17010 805 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 IFNAR1P17181 557 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 HSPA9P38646 679 aaKnown RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 MCL1Q07820 350 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 AGBL2Q5U5Z8 902 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 LRIG3Q6UXM1 1119 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 MTMR8Q96EF0 704 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.68□□□□□ -0.381e-9■■□□□ 14.5
PTPN1-201ENST00000371621 NUF2Q9BZD4 464 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ALDH8A1Q9H2A2 487 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ZBTB21Q9ULJ3 1066 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 HPSEQ9Y251 543 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 EDC4Q6P2E9 1401 aaKnown RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 TNKSO95271 1327 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 LRRN2O75325 713 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ATP5HO75947 161 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 KITP10721 976 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 PTDSS1P48651 473 aaKnown RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 ADAM9Q13443 819 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 FAM83BQ5T0W9 1011 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 TMCO5AQ8N6Q1 288 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 SDR42E1Q8WUS8 393 aa12.68□□□□□ -0.38
PTPN1-201ENST00000371621 DHTKD1Q96HY7 919 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 NR1H4Q96RI1 486 aaPredicted RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 BAZ2BQ9UIF8 2168 aaKnown RBP12.68□□□□□ -0.38
PTPN1-201ENST00000371621 SH2B2O14492 632 aaPredicted RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 LSM1O15116 133 aaKnown RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 SMNDC1O75940 238 aaKnown RBP eCLIP12.67□□□□□ -0.384e-8■■■■□ 19.3
PTPN1-201ENST00000371621 CBX6O95503 412 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 SERPING1P05155 500 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 EPB41P11171 864 aaKnown RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 CALB2P22676 271 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 PTPAQ15257 358 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 MYOCDQ8IZQ8 938 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 AGGF1Q8N302 714 aaeCLIP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 USP38Q8NB14 1042 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 SCG3Q8WXD2 468 aaKnown RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 ZNF653Q96CK0 615 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 NDEL1Q9GZM8 345 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 BSDC1Q9NW68 430 aaPredicted RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 RTL9Q8NET4 1388 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 ITIH6Q6UXX5 1313 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 G3V3G9 751 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 RNMTO43148 476 aaKnown RBP12.67□□□□□ -0.38
PTPN1-201ENST00000371621 POTEJP0CG39 1038 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 GHRP10912 638 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 YY1P25490 414 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 ERVK-9P63128 1117 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 CLUL1Q15846 466 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 DCAF8Q5TAQ9 597 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 ANKRD40Q6AI12 368 aa12.67□□□□□ -0.38
PTPN1-201ENST00000371621 IQCKQ8N0W5 287 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms