RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NAIF1Q69YI7 327 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 LRRC8EQ6NSJ5 796 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 JADE3Q92613 823 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 CEP95Q96GE4 821 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 POC1B-GALNT4F8VUJ3 575 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 TJP3O95049 919 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 SMARCA1P28370 1054 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 LETM2Q2VYF4 491 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 TRMT5Q32P41 509 aaKnown RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 APBB2Q92870 758 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 UBN1Q9NPG3 1134 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 RCOR1Q9UKL0 485 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 PCDHA13Q9Y5I0 950 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 A8MXQ7 604 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 APPBP2Q92624 585 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 RMDN1Q96DB5 314 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 MPP4Q96JB8 637 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 OSBPL3Q9H4L5 887 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 COL4A3BPQ9Y5P4 624 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 SPAG6O75602 509 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 MLH1P40692 756 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 AARSP49588 968 aaKnown RBP eCLIP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 LONRF3Q496Y0 759 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 KDM7AQ6ZMT4 941 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 OMA1Q96E52 524 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 ZBTB7BO15156 539 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 SCRN1Q12765 414 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 BHMTQ93088 406 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 CNOT6LQ96LI5 555 aaKnown RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 hCG_2014768A0A024R1R8 64 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 GCNT3O95395 438 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 R3HDM1Q15032 1099 aaKnown RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 TSHZ3Q63HK5 1081 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 LRRC39Q96DD0 335 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 RBM41Q96IZ5 413 aaKnown RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 RBL2Q08999 1139 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 ORC2Q13416 577 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 PPP6R3Q5H9R7 873 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 CDH24Q86UP0 819 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 PYROXD1Q8WU10 500 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 TMEM245Q9H330 911 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 TRIM45Q9H8W5 580 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-203ENST00000353578 ERBB4Q15303 1308 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 KDM5CP41229 1560 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 DAB2P98082 770 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 IQCB1Q15051 598 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 EDEM3Q9BZQ6 932 aa13.48□□□□□ -0.25
COL6A3-203ENST00000353578 NDUFA8P51970 172 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 KBTBD3Q8NAB2 608 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 GDAP1Q8TB36 358 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 CHAMP1Q96JM3 812 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 EML4Q9HC35 981 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 NRBP1Q9UHY1 535 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 MICAL3Q7RTP6 2002 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 FCHO2Q0JRZ9 810 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF174Q15697 407 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 Q4G0T1 1027 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 EME1Q96AY2 570 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 FBXO2Q9UK22 296 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 TCOF1Q13428 1488 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 FAM83GA6ND36 823 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 NCF2P19878 526 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 PPARGP37231 505 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ADCY7P51828 1080 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 CNBD1Q8NA66 436 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 MCRS1Q96EZ8 462 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 CLEC4MQ9H2X3 399 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 MMADHCQ9H3L0 296 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 HPCAL4Q9UM19 191 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 COMMD3-BMI1R4GMX3 469 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 SEC16BQ96JE7 1060 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 HPS5Q9UPZ3 1129 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ME3Q16798 604 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF804AQ7Z570 1209 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ATP11CQ8NB49 1132 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 RPL26L1Q9UNX3 145 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 GUCY1B2O75343 617 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 MFAP3P55082 362 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 OCRLQ01968 901 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 TP53BP2Q13625 1128 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 WDR93Q6P2C0 686 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 SEPT1Q8WYJ6 367 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 SGK1O00141 431 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 PAMP19021 973 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 TBL3Q12788 808 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 BTN2A1Q7KYR7 527 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 CCDC90BQ9GZT6 254 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 PRDM1O75626 825 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 APOA4P06727 396 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 FCGR1AP12314 374 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 RABGAP1LQ5R372 815 aa13.47□□□□□ -0.25
COL6A3-203ENST00000353578 ARL6IP4Q66PJ3 421 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 LRRC59Q96AG4 307 aaKnown RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 RPAP3Q9H6T3 665 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-203ENST00000353578 MSL3Q8N5Y2 521 aaKnown RBP13.46□□□□□ -0.25
COL6A3-203ENST00000353578 TRMT112Q9UI30 125 aaKnown RBP13.46□□□□□ -0.25
COL6A3-203ENST00000353578 KANSL1LA0AUZ9 987 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 VIL1P09327 827 aaKnown RBP13.46□□□□□ -0.25
COL6A3-203ENST00000353578 PDAP1Q13442 181 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms