RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ARMCX3Q9UH62 379 aaPredicted RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 N4BP1O75113 896 aaKnown RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 SLITRK3O94933 977 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 ALS2CR12Q96Q35 445 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 GMLQ99445 158 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.29■■□□□ 1
COL9A3-201ENST00000343916 GANQ9H2C0 597 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 EHD2Q9NZN4 543 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 CALCOCO1Q9P1Z2 691 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 ASTN1O14525 1302 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 COL4A5P29400 1685 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 PJA2O43164 708 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 PSMD10O75832 226 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 ADAMTS1Q9UHI8 967 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 LRRIQ3A6PVS8 624 aaPredicted RBP21.28■■□□□ 1
COL9A3-201ENST00000343916 VIL1P09327 827 aaKnown RBP21.28■■□□□ 1
COL9A3-201ENST00000343916 TCERG1LQ5VWI1 586 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 SYN2Q92777 582 aaPredicted RBP21.28■■□□□ 1
COL9A3-201ENST00000343916 GDAP1L1Q96MZ0 367 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 OSBPL9Q96SU4 736 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 NUCKS1Q9H1E3 243 aaKnown RBP21.28■■□□□ 1
COL9A3-201ENST00000343916 RANBP17Q9H2T7 1088 aaKnown RBP21.28■■□□□ 1
COL9A3-201ENST00000343916 SYNPO2Q9UMS6 1093 aa21.28■■□□□ 1
COL9A3-201ENST00000343916 A0A087X0T9 212 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 RBAK-RBAKDNI3L0D1 243 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 PDXKO00764 312 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 FAM228BP0C875 321 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 HNRNPH2P55795 449 aaKnown RBP21.27■■□□□ 1
COL9A3-201ENST00000343916 SPDYE2Q495Y8 402 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 KSR1Q8IVT5 923 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 GSPT2Q8IYD1 628 aaKnown RBP21.27■■□□□ 1
COL9A3-201ENST00000343916 RPGRIP1Q96KN7 1286 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 GBP3Q9H0R5 595 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 VCPKMTQ9H867 229 aa21.27■■□□□ 1
COL9A3-201ENST00000343916 WRAP73Q9P2S5 460 aaPredicted RBP21.27■■□□□ 1
COL9A3-201ENST00000343916 NR3C1P04150 777 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 NMT1P30419 496 aaKnown RBP21.27■□□□□ 0.99
COL9A3-201ENST00000343916 MRPS25P82663 173 aaKnown RBP21.27■□□□□ 0.99
COL9A3-201ENST00000343916 KLHL30Q0D2K2 578 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 ZC2HC1CQ53FD0 456 aaPredicted RBP21.27■□□□□ 0.99
COL9A3-201ENST00000343916 ARHGAP27Q6ZUM4 889 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 FRMD5Q7Z6J6 570 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 TTLL6Q8N841 843 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 TRERF1Q96PN7 1200 aa21.27■□□□□ 0.99
COL9A3-201ENST00000343916 CALUO43852 315 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-201ENST00000343916 GAS7O60861 476 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 XRCC5P13010 732 aaKnown RBP21.26■□□□□ 0.99
COL9A3-201ENST00000343916 PACSIN1Q9BY11 444 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 TYW1Q9NV66 732 aaKnown RBP21.26■□□□□ 0.99
COL9A3-201ENST00000343916 PCDHB13Q9Y5F0 798 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 STK24Q9Y6E0 443 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 AFPP02771 609 aaKnown RBP21.26■□□□□ 0.99
COL9A3-201ENST00000343916 TUBBP07437 444 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 MYBL2P10244 700 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 ARP10275 920 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 MATR3P43243 847 aaKnown RBP eCLIP21.26■□□□□ 0.99
COL9A3-201ENST00000343916 KLHDC7AQ5VTJ3 777 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 MYCT1Q8N699 235 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 CHURC1Q8WUH1 139 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 NOX5Q96PH1 765 aa21.26■□□□□ 0.99
COL9A3-201ENST00000343916 KLRC1P26715 233 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 DNA2P51530 1060 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 SLC18A3Q16572 532 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 CEP55Q53EZ4 464 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 DPY19L2P1Q6NXN4 242 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 TLR10Q9BXR5 811 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 AIPL1Q9NZN9 384 aa21.25■□□□□ 0.99
COL9A3-201ENST00000343916 TGFB1I1O43294 461 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 FAM13AO94988 1023 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 UCHL3P15374 230 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 PON1P27169 355 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 PPP2R5CQ13362 524 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 ASIC2Q16515 512 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 EXOC3L4Q17RC7 722 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 C1orf186Q6ZWK4 172 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 LDHDQ86WU2 507 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 DNAAF5Q86Y56 855 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 SLC5A5Q92911 643 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 CAP2P40123 477 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 IRX5P78411 483 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-201ENST00000343916 BMT2Q1RMZ1 405 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 HDAC7Q8WUI4 952 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 ZNF577Q9BSK1 485 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 PKD2L1Q9P0L9 805 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 HYOU1Q9Y4L1 999 aa21.24■□□□□ 0.99
COL9A3-201ENST00000343916 DDX39AO00148 427 aaKnown RBP21.23■□□□□ 0.99
COL9A3-201ENST00000343916 PTK2Q05397 1052 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 COG2Q14746 738 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 SPATA4Q8NEY3 305 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 AGBL1Q96MI9 1066 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 SPAG5Q96R06 1193 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 UNC45AQ9H3U1 944 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 TUFT1Q9NNX1 390 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 OLFML3Q9NRN5 406 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 MRPL11Q9Y3B7 192 aaKnown RBP21.23■□□□□ 0.99
COL9A3-201ENST00000343916 TARSL2A2RTX5 802 aaKnown RBP21.23■□□□□ 0.99
COL9A3-201ENST00000343916 TNNT3P45378 269 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-201ENST00000343916 PRELPP51888 382 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 KIAA0753Q2KHM9 967 aa21.23■□□□□ 0.99
COL9A3-201ENST00000343916 RTKN2Q8IZC4 609 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms