RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 BTBD18B2RXH4 712 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ATP1A3P13637 1013 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CUL3Q13618 768 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CSRNP1Q96S65 589 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 UPF3AQ9H1J1 476 aaKnown RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 SLC5A4Q9NY91 659 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 MYH8P13535 1937 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 TRIM67Q6ZTA4 783 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 FANCBQ8NB91 859 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 RETREG2Q8NC44 543 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 SH3GL3Q99963 347 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 POLIQ9UNA4 740 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ANKRD36BP1Q96IX9 119 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ADCY9O60503 1353 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 NEURL1BA8MQ27 555 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 STAT2P52630 851 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 KCNA1Q09470 495 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ANO5Q75V66 913 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 IFNL3Q8IZI9 196 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ZFYVE9O95405 1425 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 APOA1P02647 267 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 PTPREP23469 700 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 NR2F2P24468 414 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 LMNB2Q03252 620 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ICA1LQ8NDH6 482 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 NEK9Q8TD19 979 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ZBTB18Q99592 522 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 SLITRK6Q9H5Y7 841 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 COL4A3BPQ9Y5P4 624 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 PRAG1Q86YV5 1406 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 MFAP3P55082 362 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 THOC5Q13769 683 aaKnown RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 FAM160B1Q5W0V3 765 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 KIF2BQ8N4N8 673 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ENAHQ8N8S7 591 aaPredicted RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 RFWD2Q8NHY2 731 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CARD14Q9BXL6 1004 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 KCNQ3O43525 872 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 ABCB5Q2M3G0 1257 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 PCGF5Q86SE9 256 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CCNYL1Q8N7R7 359 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 FMO2Q99518 471 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 CYP4F11Q9HBI6 524 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 UBE2TQ9NPD8 197 aaPredicted RBP8.48□□□□□ -1.05
CIITA-201ENST00000324288 HPS4Q9NQG7 708 aa8.48□□□□□ -1.05
CIITA-201ENST00000324288 PARD3Q8TEW0 1356 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 MYH15Q9Y2K3 1946 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GUCY1A3Q02108 690 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 TBCCQ15814 346 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 HEXIM2Q96MH2 286 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 MYO1FO00160 1098 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 FGGP02679 453 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 SEPT2Q15019 361 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 PYROXD1Q8WU10 500 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 POLR2BP30876 1174 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 RNF207Q6ZRF8 634 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 ZNF513Q8N8E2 541 aaPredicted RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 ZFYVE19Q96K21 471 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 PBKQ96KB5 322 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 PANX2Q96RD6 677 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 SLC13A1Q9BZW2 595 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 BTNL9Q6UXG8 535 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 EPM2AIP1Q7L775 607 aaPredicted RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 ADCK1Q86TW2 530 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 KIAA0586Q9BVV6 1533 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 EHD2Q9NZN4 543 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 FAM8A1Q9UBU6 413 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 LRFN2Q9ULH4 789 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 RAPGEF6Q8TEU7 1601 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 RNF103-CHMP3A0A140T963 221 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 LRRC24Q50LG9 513 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GLE1Q53GS7 698 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 CDC25AP30304 524 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 DR1Q01658 176 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 DNAJC24Q6P3W2 148 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 SRRM1Q8IYB3 904 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 ZNF577Q9BSK1 485 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 CPSF3Q9UKF6 684 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 TLK1Q9UKI8 766 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 ARID1AO14497 2285 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 HSPA4LO95757 839 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GRK2P25098 689 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 FAM26FQ5R3K3 315 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 RNF135Q8IUD6 432 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 PASD1Q8IV76 773 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 CCHCR1Q8TD31 782 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 NT5C1BQ96P26 610 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 SH3GL2Q99962 352 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 TMA7Q9Y2S6 64 aaKnown RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 GOLGA8IPA6NC78 632 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GOLGA8JA6NMD2 632 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GOLGA8CPA6NN73 597 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 ZSCAN9O15535 394 aaPredicted RBP8.47□□□□□ -1.05
CIITA-201ENST00000324288 RNPEPQ9H4A4 650 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 LMCD1Q9NZU5 365 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 GMNCA6NCL1 334 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 PLD3Q8IV08 490 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 KLC4Q9NSK0 619 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 SNX5Q9Y5X3 404 aa8.47□□□□□ -1.05
CIITA-201ENST00000324288 POLR3AO14802 1390 aaPredicted RBP8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms