RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CYP26C1Q6V0L0 522 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 NELFCDQ8IXH7 590 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 CHST13Q8NET6 341 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 TTC26A0AVF1 554 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 TESPA1A2RU30 521 aaPredicted RBP16.9■□□□□ 0.3
SF3B4-201ENST00000271628 PDXKO00764 312 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 CETN3O15182 167 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 CALUO43852 315 aaPredicted RBP16.9■□□□□ 0.3
SF3B4-201ENST00000271628 GUCY2CP25092 1073 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 QARSP47897 775 aaKnown RBP16.9■□□□□ 0.3
SF3B4-201ENST00000271628 JAK3P52333 1124 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 KRT76Q01546 638 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 ADAM9Q13443 819 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 PLS1Q14651 629 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 TRIM65Q6PJ69 517 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 REXO1L1PQ8IX06 675 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 ZC3H3Q8IXZ2 948 aaKnown RBP16.9■□□□□ 0.3
SF3B4-201ENST00000271628 PROCA1Q8NCQ7 364 aaPredicted RBP16.9■□□□□ 0.3
SF3B4-201ENST00000271628 BANK1Q8NDB2 785 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 PKNOX2Q96KN3 472 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 PARVGQ9HBI0 331 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 CYP39A1Q9NYL5 469 aa16.9■□□□□ 0.3
SF3B4-201ENST00000271628 ARHGEF35A5YM69 484 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 EIF3DO15371 548 aaKnown RBP eCLIP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 LYPLA2O95372 231 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 CCDC175P0C221 793 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 CCDC40Q4G0X9 1142 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 STXBP4Q6ZWJ1 553 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 ERO1BQ86YB8 467 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 CDHR1Q96JP9 859 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 PKD2L1Q9P0L9 805 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 WRAP73Q9P2S5 460 aaPredicted RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 DNAI1Q9UI46 699 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 PAPPA2Q9BXP8 1791 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 ZC3H4Q9UPT8 1303 aaKnown RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 A0A1W2PQJ5 194 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 RSPH10B2B2RC85 870 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 CXCL11O14625 94 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 RSPH10BP0C881 870 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 EPHX2P34913 555 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 ZNF131P52739 623 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 FBXO38Q6PIJ6 1188 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 LBX2Q6XYB7 198 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 MYCT1Q8N699 235 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 RDM1Q8NG50 284 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 PCMTD1Q96MG8 357 aaPredicted RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 INPP4AQ96PE3 977 aaPredicted RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 DNAJC7Q99615 494 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 A1CFQ9NQ94 594 aaKnown RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 FBXO40Q9UH90 709 aa16.89■□□□□ 0.29
SF3B4-201ENST00000271628 DBR1Q9UK59 544 aaKnown RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 V9GYY5 206 aaPredicted RBP16.89■□□□□ 0.29
SF3B4-201ENST00000271628 PTPRFP10586 1907 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 SOWAHDA6NJG2 315 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 WDR64B1ANS9 1081 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 GCNT3O95395 438 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 RPL13P26373 211 aaKnown RBP16.88■□□□□ 0.29
SF3B4-201ENST00000271628 CASP5P51878 434 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 DLK2Q6UY11 383 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 TOGARAM2Q6ZUX3 1019 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 TTYH3Q9C0H2 523 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 TYW1Q9NV66 732 aaKnown RBP16.88■□□□□ 0.29
SF3B4-201ENST00000271628 FAM184BQ9ULE4 1060 aa16.88■□□□□ 0.29
SF3B4-201ENST00000271628 A0A0G2JLL6 359 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 RNF225M0QZC1 329 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ZBTB39O15060 712 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ZBED6P86452 979 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 PRRT2Q7Z6L0 340 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 C4orf19Q8IY42 314 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 DNERQ8NFT8 737 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 CDCA5Q96FF9 252 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 PURBQ96QR8 312 aaKnown RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 IWS1Q96ST2 819 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 FAM53CQ9NYF3 392 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 OTOFQ9HC10 1997 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ATP9AO75110 1047 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 MYBP10242 640 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 H2AFXP16104 143 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 NR2F2P24468 414 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 GABPB1Q06547 395 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 GNPTABQ3T906 1256 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 TREML2Q5T2D2 321 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ZNF746Q6NUN9 644 aaPredicted RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 RAD9BQ6WBX8 426 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 KRT222Q8N1A0 295 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 SENP7Q9BQF6 1050 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ELP3Q9H9T3 547 aa16.87■□□□□ 0.29
SF3B4-201ENST00000271628 ZNHIT6Q9NWK9 470 aaKnown RBP16.87■□□□□ 0.29
SF3B4-201ENST00000271628 UBE4BO95155 1302 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 GLTPD2A6NH11 291 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 IRF6O14896 467 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 PRPF6O94906 941 aaKnown RBP16.86■□□□□ 0.29
SF3B4-201ENST00000271628 PSMC5P62195 406 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 PPP2R3AQ06190 1150 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 ERCC6LQ2NKX8 1250 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 FAM178BQ8IXR5 827 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 TIPINQ9BVW5 301 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 PCDHB13Q9Y5F0 798 aa16.86■□□□□ 0.29
SF3B4-201ENST00000271628 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms