RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W YMR310CQ04867 317 aaPredicted RBP5.6□□□□□ -1.51
ATG4YNL223W YML053CQ04978 212 aa5.6□□□□□ -1.51
ATG4YNL223W ENT2Q05785 613 aa5.6□□□□□ -1.51
ATG4YNL223W BOP2Q06150 570 aa5.6□□□□□ -1.51
ATG4YNL223W TSC13Q99190 310 aa5.6□□□□□ -1.51
ATG4YNL223W TPK3P05986 398 aa5.59□□□□□ -1.51
ATG4YNL223W VPS33P20795 691 aa5.59□□□□□ -1.51
ATG4YNL223W SLY41P22215 453 aa5.59□□□□□ -1.51
ATG4YNL223W PTP1P25044 335 aa5.59□□□□□ -1.51
ATG4YNL223W RER1P25560 188 aa5.59□□□□□ -1.51
ATG4YNL223W GSH1P32477 678 aa5.59□□□□□ -1.51
ATG4YNL223W GDH2P33327 1092 aaKnown RBP5.59□□□□□ -1.51
ATG4YNL223W LOT5P34234 306 aa5.59□□□□□ -1.51
ATG4YNL223W OMA1P36163 345 aa5.59□□□□□ -1.51
ATG4YNL223W ZTA1P38230 334 aaKnown RBP5.59□□□□□ -1.51
ATG4YNL223W YBR138CP38277 524 aa5.59□□□□□ -1.51
ATG4YNL223W EHT1P38295 451 aa5.59□□□□□ -1.51
ATG4YNL223W SPO73P40031 143 aa5.59□□□□□ -1.51
ATG4YNL223W COG3P40094 801 aa5.59□□□□□ -1.51
ATG4YNL223W MSS2P40990 351 aa5.59□□□□□ -1.51
ATG4YNL223W YGR201CP42936 225 aa5.59□□□□□ -1.51
ATG4YNL223W STE24P47154 453 aa5.59□□□□□ -1.51
ATG4YNL223W MON1P53129 644 aa5.59□□□□□ -1.51
ATG4YNL223W PRM8P53174 237 aa5.59□□□□□ -1.51
ATG4YNL223W ATF2P53296 535 aa5.59□□□□□ -1.51
ATG4YNL223W RSN1Q03516 953 aa5.59□□□□□ -1.51
ATG4YNL223W RQC1Q05468 723 aaKnown RBP5.59□□□□□ -1.51
ATG4YNL223W BSC1Q12140 328 aa5.59□□□□□ -1.51
ATG4YNL223W YLR126CQ12288 251 aa5.59□□□□□ -1.51
ATG4YNL223W SFM1Q12314 213 aa5.59□□□□□ -1.51
ATG4YNL223W RRP12Q12754 1228 aaKnown RBP5.59□□□□□ -1.51
ATG4YNL223W YPL119C-AQ3E751 87 aa5.59□□□□□ -1.51
ATG4YNL223W LAG2Q92325 660 aa5.59□□□□□ -1.51
ATG4YNL223W PNO1Q99216 274 aaKnown RBP5.59□□□□□ -1.51
ATG4YNL223W ZWF1P11412 505 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W PRP2P20095 876 aaPredicted RBP5.58□□□□□ -1.52
ATG4YNL223W NPR1P22211 790 aa5.58□□□□□ -1.52
ATG4YNL223W MGR1P25573 417 aa5.58□□□□□ -1.52
ATG4YNL223W IDH1P28834 360 aaKnown RBP RIP-Chip data5.58□□□□□ -1.52not detected
ATG4YNL223W PRO1P32264 428 aa5.58□□□□□ -1.52
ATG4YNL223W OAR1P35731 278 aa5.58□□□□□ -1.52
ATG4YNL223W AHP1P38013 176 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W GOS1P38736 223 aa5.58□□□□□ -1.52
ATG4YNL223W EGD2P38879 174 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W PRE6P40303 254 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W YJL068CP40363 299 aa5.58□□□□□ -1.52
ATG4YNL223W TED1P40533 473 aa5.58□□□□□ -1.52
ATG4YNL223W RPL10P41805 221 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W UBC9P50623 157 aaPredicted RBP5.58□□□□□ -1.52
ATG4YNL223W CDH1P53197 566 aa5.58□□□□□ -1.52
ATG4YNL223W ESF2P53743 316 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W RIM13Q03792 727 aa5.58□□□□□ -1.52
ATG4YNL223W ISR1Q06098 443 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W ARO10Q06408 635 aa5.58□□□□□ -1.52
ATG4YNL223W DCI1Q08558 271 aa5.58□□□□□ -1.52
ATG4YNL223W IRC13Q08630 104 aa5.58□□□□□ -1.52
ATG4YNL223W MMT2Q08970 484 aa5.58□□□□□ -1.52
ATG4YNL223W YDR262WQ12331 272 aa5.58□□□□□ -1.52
ATG4YNL223W MHF1Q3E835 90 aa5.58□□□□□ -1.52
ATG4YNL223W DBP3P20447 523 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W ARE1P25628 610 aa5.58□□□□□ -1.52
ATG4YNL223W PRP21P32524 280 aaPredicted RBP5.58□□□□□ -1.52
ATG4YNL223W RPN2P32565 945 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W TUL1P36096 758 aa5.58□□□□□ -1.52
ATG4YNL223W YKR015CP36111 568 aa5.58□□□□□ -1.52
ATG4YNL223W APE4P38821 490 aa5.58□□□□□ -1.52
ATG4YNL223W RIX1P38883 763 aaPredicted RBP5.58□□□□□ -1.52
ATG4YNL223W MNL1P38888 796 aa5.58□□□□□ -1.52
ATG4YNL223W AVT6P40074 448 aa5.58□□□□□ -1.52
ATG4YNL223W MRPS18P42847 217 aa5.58□□□□□ -1.52
ATG4YNL223W BIT61P47041 543 aa5.58□□□□□ -1.52
ATG4YNL223W HOS2P53096 452 aaPredicted RBP5.58□□□□□ -1.52
ATG4YNL223W SLD3P53135 668 aa5.58□□□□□ -1.52
ATG4YNL223W COG5P53951 403 aa5.58□□□□□ -1.52
ATG4YNL223W YPL107WQ02873 248 aa5.58□□□□□ -1.52
ATG4YNL223W RSC9Q03124 581 aa5.58□□□□□ -1.52
ATG4YNL223W TLG1Q03322 224 aa5.58□□□□□ -1.52
ATG4YNL223W LEU9Q12166 604 aaKnown RBP5.58□□□□□ -1.52
ATG4YNL223W GLE1Q12315 538 aa5.58□□□□□ -1.52
ATG4YNL223W GLO4Q12320 285 aa5.58□□□□□ -1.52
ATG4YNL223W MRX4Q12467 430 aa5.58□□□□□ -1.52
ATG4YNL223W SKS1Q12505 502 aa5.58□□□□□ -1.52
ATG4YNL223W VCX1Q99385 411 aa5.58□□□□□ -1.52
ATG4YNL223W BEM2P39960 2167 aaKnown RBP5.57□□□□□ -1.52
ATG4YNL223W TAH1P25638 111 aaPredicted RBP5.57□□□□□ -1.52
ATG4YNL223W SRB5P32585 307 aa5.57□□□□□ -1.52
ATG4YNL223W NUF2P33895 451 aa5.57□□□□□ -1.52
ATG4YNL223W SIC1P38634 284 aa5.57□□□□□ -1.52
ATG4YNL223W SSZ1P38788 538 aaKnown RBP5.57□□□□□ -1.52
ATG4YNL223W BIG1P38813 335 aa5.57□□□□□ -1.52
ATG4YNL223W SOP4P39543 234 aaPredicted RBP5.57□□□□□ -1.52
ATG4YNL223W TPA1P40032 644 aaKnown RBP5.57□□□□□ -1.52
ATG4YNL223W YPS6P40583 537 aa5.57□□□□□ -1.52
ATG4YNL223W SNF12P53628 566 aa5.57□□□□□ -1.52
ATG4YNL223W REC102Q02721 264 aa5.57□□□□□ -1.52
ATG4YNL223W RSF1Q05043 376 aa5.57□□□□□ -1.52
ATG4YNL223W YPL066WQ12194 479 aa5.57□□□□□ -1.52
ATG4YNL223W NFI1Q12216 726 aa5.57□□□□□ -1.52
ATG4YNL223W MED11Q99278 115 aa5.57□□□□□ -1.52
ATG4YNL223W RPC40P07703 335 aaKnown RBP5.56□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 22 ms