RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	YCP4	P25349	247 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	ZIP1	P31111	875 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	DEG1	P31115	442 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	MSS51	P32335	436 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	REC114	P32841	428 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	SHP1	P34223	423 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	INM1	P38710	295 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	YHR122W	P38829	231 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	FET3	P38993	636 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	GAT2	P40209	560 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	TFG2	P41896	400 aa	Predicted RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	FMP33	P46998	180 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	HAM1	P47119	197 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	STE24	P47154	453 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	RMR1	P53060	241 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	SPP2	Q02521	185 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	SHR3	Q02774	210 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	MYO5	Q04439	1219 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	SMC5	Q08204	1093 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	LSP1	Q12230	341 aa	Known RBP	4.58	□□□□□ -1.68
ROT1	YMR200W	RUP1	Q12242	671 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	YBL111C	Q3E7Y5	667 aa		4.58	□□□□□ -1.68
ROT1	YMR200W	GDH1	P07262	454 aa	Known RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	MATALPHA1	P0CY06	175 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	HMLALPHA1	P0CY07	175 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	NHP6B	P11633	99 aa	Known RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	SEC63	P14906	663 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	KRS1	P15180	591 aa	Known RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	COQ1	P18900	473 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	RGT1	P32862	1170 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	MMS21	P38632	267 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	HIT1	P46973	164 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	YMR178W	Q03219	274 aa	Known RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	ENT5	Q03769	411 aa	Known RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	PLM2	Q04383	521 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	LOT6	Q07923	191 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	YOR029W	Q12243	111 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	PRP46	Q12417	451 aa	Predicted RBP	4.57	□□□□□ -1.68
ROT1	YMR200W	YPR1	Q12458	312 aa		4.57	□□□□□ -1.68
ROT1	YMR200W	CNA1	P23287	553 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	PPA2	P28239	310 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	MSK1	P32048	576 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	CYS4	P32582	507 aa	Known RBP	4.56	□□□□□ -1.68
ROT1	YMR200W	MTR2	P34232	184 aa	Known RBP	4.56	□□□□□ -1.68
ROT1	YMR200W	SPT10	P35208	640 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	AIM29	P36154	155 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	RTT107	P38850	1070 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	DSE1	P40077	573 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	HXT9	P40885	567 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	RPS10B	P46784	105 aa	Known RBP	4.56	□□□□□ -1.68
ROT1	YMR200W	ZPR1	P53303	486 aa	Known RBP	4.56	□□□□□ -1.68
ROT1	YMR200W	RTC4	P53850	401 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	HXT11	P54862	567 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	BET4	Q00618	327 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	YMR087W	Q04299	284 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	BUR2	Q05949	395 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	AAD15	Q08361	143 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	FRE7	Q12333	620 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	LAG2	Q92325	660 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	UBA3	Q99344	299 aa		4.56	□□□□□ -1.68
ROT1	YMR200W	CHS1	P08004	1131 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PMA2	P19657	947 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	DBR1	P24309	405 aa	Known RBP	4.55	□□□□□ -1.68
ROT1	YMR200W	PTP1	P25044	335 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PBN1	P25580	416 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	ACP1	P32463	125 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PRP21	P32524	280 aa	Predicted RBP	4.55	□□□□□ -1.68
ROT1	YMR200W	BNA4	P38169	460 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	STP2	P38704	541 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PRM9	P39551	298 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	UTP25	P40498	721 aa	Known RBP	4.55	□□□□□ -1.68
ROT1	YMR200W	GAT1	P43574	510 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PHO86	P46956	311 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	YDL186W	P48568	277 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	LIF1	P53150	421 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	DUG3	P53871	357 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	YVH1	Q02256	364 aa	Known RBP	4.55	□□□□□ -1.68
ROT1	YMR200W	PFA5	Q03289	374 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	FUS2	Q05670	677 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	YLR283W	Q05867	314 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PIG1	Q06216	648 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	PAM18	Q07914	168 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	RAX1	Q08760	435 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	NCE102	Q12207	173 aa	RIP-Chip data	4.55	□□□□□ -1.68	not detected
ROT1	YMR200W	AIM45	Q12480	344 aa	Known RBP	4.55	□□□□□ -1.68
ROT1	YMR200W	FSH3	Q99369	266 aa		4.55	□□□□□ -1.68
ROT1	YMR200W	RNR3	P21672	869 aa	Known RBP	4.54	□□□□□ -1.68
ROT1	YMR200W	MRPL10	P36520	322 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	TCM62	P38228	572 aa	Known RBP	4.54	□□□□□ -1.68
ROT1	YMR200W	SBE22	P38814	852 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	UBA4	P38820	440 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	YER079W	P40052	210 aa	Known RBP	4.54	□□□□□ -1.68
ROT1	YMR200W	RFC4	P40339	323 aa	Known RBP	4.54	□□□□□ -1.68
ROT1	YMR200W	SAS2	P40963	338 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	POP1	P41812	875 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
ROT1	YMR200W	SNG1	P46950	547 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	YJR011C	P47086	261 aa	Predicted RBP	4.54	□□□□□ -1.68
ROT1	YMR200W	ABM1	P47146	123 aa		4.54	□□□□□ -1.68
ROT1	YMR200W	KAP114	P53067	1004 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 17 ms